miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00792;mir-490;AC113246.15/27115-26988 10090:Mus musculus (house
mouse)
Length = 128
Score = 190 bits (96), Expect = 3e-48
Identities = 114/120 (95%)
Strand = Plus / Plus
Query: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaagcctggctgatttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
Query: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtttagatatacaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
>RF00792;mir-490;AANN01372443.1/381-254 9365:Erinaceus europaeus
(western European hedgehog)
Length = 128
Score = 182 bits (92), Expect = 8e-46
Identities = 119/128 (92%)
Strand = Plus / Plus
Query: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggagaccttgctggcttgcaaagttcattgttcgacaccatggatctccaggtgggtca 60
Query: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
|||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 61 cgttttgagatacaccaacctggaggactccatgctgttgagctgttcataagctgcgga 120
Query: 121 cacttcca 128
|||||||
Sbjct: 121 tacttcca 128
>RF00792;mir-490;AAYZ01127575.1/844-971 9978:Ochotona princeps
(American pika)
Length = 128
Score = 180 bits (91), Expect = 3e-45
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 24 gttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacctgg 83
|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 24 gttcattgttcggcaccatggatctccaggtgggtcacgtttagagatacaccaacctgg 83
Query: 84 aggactccatgctgttgagctgttcacaagcagcggacacttc 126
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 aggactccatgctgttgagctgttcacaagcagcggacacttc 126
>RF00792;mir-490;AAKN02015558.1/78118-77991 10141:Cavia porcellus
(domestic guinea pig)
Length = 128
Score = 174 bits (88), Expect = 2e-43
Identities = 118/128 (92%)
Strand = Plus / Plus
Query: 1 tggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtca 60
||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tggaggcctcgctggtgtggaaagttcattgttcggcaccatggatctccaggtgggtca 60
Query: 61 agtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcgga 120
| ||||| || |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 61 cggttagaaatacaccaacctggaggactccatgctgtcgagctgttcatgagcagcgga 120
Query: 121 cacttcca 128
||||||||
Sbjct: 121 cacttcca 128
>RF00792;mir-490;AAQQ01772082.1/825-951 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 127
Score = 172 bits (87), Expect = 7e-43
Identities = 102/107 (95%)
Strand = Plus / Plus
Query: 22 aagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcaccaacct 81
||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct: 21 aagttcattgttcgacaccatggatctccaggtgggtcacgtttagaggttaaccaacct 80
Query: 82 ggaggactccatgctgttgagctgttcacaagcagcggacacttcca 128
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 81 ggaggactccatgctgttgagctgttcacaagcagcggatacttcca 127
>RF00792;mir-490;ABRQ01197453.1/2148-2275 9813:Procavia capensis
(cape rock hyrax)
Length = 128
Score = 168 bits (85), Expect = 1e-41
Identities = 115/125 (92%)
Strand = Plus / Plus
Query: 2 ggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaa 61
|||| |||||||| |||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 2 ggagaccttgctgatttggaaattacatggttcgacaccatggatctccaggtgggtcac 61
Query: 62 gtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggac 121
| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggttacaggtacaccaacctggaggactccatgctgttgagctgttcacaagcagcggac 121
Query: 122 acttc 126
|||||
Sbjct: 122 acttc 126
>RF00792;mir-490;AADN02006399.1/20529-20400 9031:Gallus gallus
(chicken)
Length = 130
Score = 155 bits (78), Expect = 2e-37
Identities = 96/101 (95%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 22 aagttcattgttcgacaccatggatctccaggtgggtcaagttta--gagatgcaccaac 79
|||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 22 aagttcatggttcgacaccatggatctccaggtgggtcaagattatagagatacaccaac 81
Query: 80 ctggaggactccatgctgttgagctgttcacaagcagcgga 120
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 ctggaggactccatgctgttgagctgttcacaagcagcgga 122
>RF00792;mir-490;ABQO010519113.1/1706-1579 9315:Macropus eugenii
(tammar wallaby)
Length = 128
Score = 151 bits (76), Expect = 3e-36
Identities = 106/116 (91%)
Strand = Plus / Plus
Query: 2 ggaggccttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaa 61
||||||| || |||||| |||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 2 ggaggccatgttggttttgaaagttcatggttcgacaccatggatctccaggtaggtcaa 61
Query: 62 gtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaagcagc 117
| ||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 62 ggttagaaatgtaccaacctggagtactccatgctgttgagctgttcactagcagc 117
>RF00792;mir-490;AAPN01246488.1/31456-31583 9258:Ornithorhynchus
anatinus (platypus)
Length = 128
Score = 133 bits (67), Expect = 6e-31
Identities = 91/99 (91%)
Strand = Plus / Plus
Query: 17 ttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttagagatgcacc 76
|||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct: 17 ttggaaagttcacggttcgacgccatggatctccaggtgggtcaaggttagagacgcacc 76
Query: 77 aacctggaggactccatgctgttgagctgttcacaagca 115
|||||||||||||||||||||| |||||| |||| ||||
Sbjct: 77 aacctggaggactccatgctgtcgagctgatcacgagca 115
>RF00792;mir-490;AAWZ01012016.1/49356-49227 28377:Anolis
carolinensis (green anole)
Length = 130
Score = 115 bits (58), Expect = 1e-25
Identities = 76/81 (93%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 36 acaccatggatctccaggtgggtcaagttta--gagatgcaccaacctggaggactccat 93
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct: 36 acaccatggatctccaggtgggtcaagattatagagaaacaccaacctggaggactccat 95
Query: 94 gctgttgagctgttcacaagc 114
|||||||||||||||||||||
Sbjct: 96 gctgttgagctgttcacaagc 116
>RF00792;mir-490;ABRP01133569.1/2630-2749 132908:Pteropus vampyrus
(large flying fox)
Length = 120
Score = 87.7 bits (44), Expect = 3e-17
Identities = 70/76 (92%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 53 gtgggtcaagtttagagatgcaccaacctggaggactccatgctgttgagctgttcacaa 112
|||||||| |||| ||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct: 47 gtgggtcacgttt-gagatacaccaacctggaggactgcatgctgt-gagctgttcacaa 104
Query: 113 gcagcggacacttcca 128
||| ||||||||||||
Sbjct: 105 gcaccggacacttcca 120
>RF00792;mir-490;AAFR03031771.1/89803-89676 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 128
Score = 73.8 bits (37), Expect = 5e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 40 catggatctccaggtgggtcaagtttagagatgcaccaacctggaggactccatgctgtt 99
|||||||||| |||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 40 catggatctcttggtgggtcaagtttaggaatataccaacctggaggactccaagctgtt 99
Query: 100 gagct 104
|||||
Sbjct: 100 gagct 104
>RF00792;mir-490;AAIY01755813.1/1336-1204 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 133
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 85 ggactccatgctgttgagctgttcacaagca 115
|||||||||||||||||||| ||||||||||
Sbjct: 90 ggactccatgctgttgagctattcacaagca 120
