miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAIY01434920.1/105-183 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 145 bits (73), Expect = 1e-34
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 7 ctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcac 64
Query: 67 ttctttttcggta 79
|||||||||||||
Sbjct: 65 ttctttttcggta 77
>RF00641;mir-154;ABRQ01054369.1/2520-2599 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 119 bits (60), Expect = 6e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 2 ggtacctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatgg 61
||||||||| | ||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtacctgagaggaagttgcccatgttcttttcgctttatacgtgacgaaacaaacatgg 60
Query: 62 tgcacttctttttcggtatc 81
||||||||||||| ||||||
Sbjct: 61 tgcacttctttttaggtatc 80
>RF00641;mir-154;AAPY01359973.1/4034-4113 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 14 gaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttctttt 73
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 13 gaagctgcccgtgttattttcgctttatgtgtgacgaaacaaacatggtgcacttctttt 72
Query: 74 tcggtatc 81
|||||||
Sbjct: 73 ccggtatc 80
>RF00641;mir-154;AACN010421419.1/1043-964 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 99.6 bits (50), Expect = 5e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 12 aagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttctt 71
|||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct: 11 aagaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 70
Query: 72 tttcggtatc 81
| ||||||||
Sbjct: 71 tctcggtatc 80
>RF00641;mir-154;AAFC03086346.1/3792-3714 9913:Bos taurus (cattle)
Length = 79
Score = 95.6 bits (48), Expect = 8e-20
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 6 cctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgca 65
|||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 5 cctggaaagaagttgcccatgttcttttcgctg-atatgtgacgaaacaaacatggtgca 63
Query: 66 cttctttt 73
||||||||
Sbjct: 64 cttctttt 71
>RF00641;mir-154;AAYZ01424897.1/1412-1491 9978:Ochotona princeps
(American pika)
Length = 80
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 6 cctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgca 65
||||| ||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct: 5 cctgagaagaagtcgcccatgttcttttcgctgaatatgtgccgaaacaaacatggtgca 64
Query: 66 cttctt 71
||||||
Sbjct: 65 cttctt 70
>RF00641;mir-154;ABRQ01054369.1/755-834 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 13 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 72
||||||||||| |||| |||||||| || |||||||||||| | |||||||||||||
Sbjct: 12 agaagttgcccgtgtttttttcgctgaatctgtgacgaaacattcgcggtgcacttcttt 71
Query: 73 ttcggtatc 81
||| |||||
Sbjct: 72 ttcagtatc 80
