miRNEST 2.0, an integrative microRNA resource :: BLAST
>41237_csi-MIR390:mirbase
Length = 154
Score = 81.8 bits (41), Expect = 1e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 2 aaagtagagaagaatctgttaagctcaggagggatagcgccatgg 46
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagtaaagaagaatctgttaagctcaggagggatagcgccatgg 45
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttcttactctc 112
|||||||||||||||||||||| ||||||||||||||||
Sbjct: 98 gcgctatccatcctgagtttcatggcttcttcttactctc 137
>39862_aly-MIR390a:mirbase
Length = 129
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 3 aagtagagaagaatctgttaagctcaggagggatagcgccatg 45
|||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 aagtagagaagaatctgtaaagctcaggagggatagcgccatg 52
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 10 gaagaatctgttaagctcaggagggatagcgccatgg 46
|||||||||||||||||||||||||||||||||||||
Sbjct: 6 gaagaatctgttaagctcaggagggatagcgccatgg 42
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttca 94
||||||||||||||||||||||
Sbjct: 94 gcgctatccatcctgagtttca 115
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 10 gaagaatctgttaagctcaggagggatagcgccatgg 46
|||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttca 94
||||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttca 112
>40072_ath-MIR390a:mirbase
Length = 107
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 5 gtagagaagaatctgttaagctcaggagggatagcgccatg 45
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttcttact 109
|||||||||||||||||||||| || ||||||||||
Sbjct: 69 gcgctatccatcctgagtttcattggctcttcttact 105
>40468_gma-MIR390a:mirbase
Length = 105
Score = 71.9 bits (36), Expect = 1e-13
Identities = 75/88 (85%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatgg-----cgggtcttgaatcttgatct 66
||||||||| ||||||||||||||||||||||||| | |||| | |||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatggatgatcttctcttcactcttgatct 60
Query: 67 tcatttgcgctatccatcctgagtttca 94
|| ||||||||||||||||||||||||
Sbjct: 61 tctcttgcgctatccatcctgagtttca 88
>40467_gma-MIR390a:mirbase
Length = 105
Score = 71.9 bits (36), Expect = 1e-13
Identities = 75/88 (85%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatgg-----cgggtcttgaatcttgatct 66
||||||||| ||||||||||||||||||||||||| | |||| | |||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatggatgatcttctcttcactcttgatct 60
Query: 67 tcatttgcgctatccatcctgagtttca 94
|| ||||||||||||||||||||||||
Sbjct: 61 tctcttgcgctatccatcctgagtttca 88
>40293_bna-MIR390b:mirbase
Length = 105
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 5 gtagagaagaatctgttaagctcaggagggatagcgccat 44
|||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccat 40
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttcttact 109
||||| |||||||||||||||| || ||||||||||
Sbjct: 67 gcgctgtccatcctgagtttcattggctcttcttact 103
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatgg 46
|||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatgg 35
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttca 94
||||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtttca 108
>41640_vvi-MIR390:mirbase
Length = 140
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatg 45
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttc 104
|||||||| |||||||||||||| | ||||||
Sbjct: 109 gcgctatctatcctgagtttcacgggttcttc 140
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccatg 45
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgcc 42
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactg 97
|||||||||||||||||||| ||||
Sbjct: 79 gcgctatccatcctgagttttactg 103
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 15 atctgttaagctcaggagggatagcgccatg 45
|||||||||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatg 34
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgcc 42
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgctt 100
|||||||||||||||||||||| |||||
Sbjct: 79 gcgctatccatcctgagtttcattgctt 106
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 60.0 bits (30), Expect = 4e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 4 agtagagaagaatctgttaagctcaggagggatagcgccatggcgggtcttgaatctt 61
|||| |||||| |||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 3 agtatagaagagcctgttaagctcaggagggatagcgccattgatgatcttgaatctt 60
Score = 54.0 bits (27), Expect = 2e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 61 tgatcttcatttgcgctatccatcctgagtttcactgcttcttcttactct 111
||||| ||||| |||||||||||||||||||||| | |||||||| ||||
Sbjct: 76 tgatcctcattagcgctatccatcctgagtttcatcggttcttcttgctct 126
>40294_bna-MIR390c:mirbase
Length = 128
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 4 agtagagaagaatctgttaagctcaggagggatagcgccatg 45
|||||||||| | |||| ||||||||||||||||||||||||
Sbjct: 5 agtagagaagtagctgtaaagctcaggagggatagcgccatg 46
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
||||||||||||||||||| || ||||||||||
Sbjct: 85 gcgctatccatcctgagttccatggcttcttctt 118
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagcgccat 44
||||||||| |||||||||||||||||||||||
Sbjct: 11 agaatctgtaaagctcaggagggatagcgccat 43
>40705_mtr-MIR390:mirbase
Length = 100
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 17 ctgttaagctcaggagggatagcgccat 44
||||||||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgccat 28
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 60 ttgatcttcatttgcgctatccatcctgagtttca 94
||||||||| ||||||||||||||||||||||||
Sbjct: 63 ttgatcttctcttgcgctatccatcctgagtttca 97
>40372_rco-MIR390b:mirbase
Length = 122
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 21 taagctcaggagggatagcgccatgg 46
||||||||||||||||||||||||||
Sbjct: 5 taagctcaggagggatagcgccatgg 30
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttca 94
||||||||||||||||||||||
Sbjct: 96 gcgctatccatcctgagtttca 117
>40371_rco-MIR390a:mirbase
Length = 108
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 ctgttaagctcaggagggatagcgcc 42
||||||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgcc 26
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcac 95
|||||||||||||||||||||||
Sbjct: 82 gcgctatccatcctgagtttcac 104
>40292_bna-MIR390a:mirbase
Length = 144
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 8 gagaagaatctgttaagctcaggagggatagcgccatg 45
|||||| | |||| ||||||||||||||||||||||||
Sbjct: 19 gagaagtagctgtaaagctcaggagggatagcgccatg 56
>40073_ath-MIR390b:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgccatggc 47
||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggc 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
||||||||||||||||||| || ||||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttctt 120
>40469_gma-MIR390b:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 agaatctgttaagctcaggagggatagc 39
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>39863_aly-MIR390b:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgccatg 45
||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatg 42
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 73 gcgctatccatcctgagtttcactgcttcttctt 106
||||||||||||||||||| || ||||||||||
Sbjct: 91 gcgctatccatcctgagttccatagcttcttctt 124
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgccat 44
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcc 42
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcc 42
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcc 42
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcc 42
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcc 42
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcc 42
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcc 42
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 agctcaggagggatagcgcc 42
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
