miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28816_hsa-mir-548b:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 cagactatatatttaggttggcgcaaaagtaattgtggttttggcctttattttcaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagactatatatttaggttggcgcaaaagtaattgtggttttggcctttattttcaatgg 60
Query: 61 caagaacctcagttgcttttgtgccaacctaatactt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagaacctcagttgcttttgtgccaacctaatactt 97
>30472_ptr-mir-548b:mirbase
Length = 96
Score = 174 bits (88), Expect = 8e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 cagactatatatttaggttggcgcaaaagtaattgtggttttggcctttattttcaatgg 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 cagactatatatttaggttggcgcaaaagtaattgcagttttggcctttattttcaatgg 60
Query: 61 caagaacctcagttgcttttgtgccaacctaatact 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagaacctcagttgcttttgtgccaacctaatact 96
>27997_mml-mir-548b:mirbase
Length = 97
Score = 129 bits (65), Expect = 4e-31
Identities = 86/93 (92%)
Strand = Plus / Plus
Query: 5 ctatatatttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaag 64
|||| |||||||||||| ||||||||||||| || || |||||||||||||||||||||
Sbjct: 5 ctatgtatttaggttggtgcaaaagtaattggggcttgggcctttattttcaatggcaaa 64
Query: 65 aacctcagttgcttttgtgccaacctaatactt 97
||||||| |||||||||||||||||||||||||
Sbjct: 65 aacctcaattgcttttgtgccaacctaatactt 97
>28800_hsa-mir-548aa-2:mirbase
Length = 97
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||| || ||||||||| ||| ||| |||||||||||| |||| ||
Sbjct: 6 ttaggttggtgcaaaagaaactgtggtttttgccattactttcaatggcaaaaaccacaa 65
Query: 73 ttgcttttgtgccaacctaa 92
|| |||||| |||||||||
Sbjct: 66 ttacttttgcaccaacctaa 85
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 11 atttaggttggcgcaaaagtaattgtggtttt 42
||||||||||| ||||||||||||||||||||
Sbjct: 87 atttaggttggtgcaaaagtaattgtggtttt 56
>28822_hsa-mir-548d-2:mirbase
Length = 97
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||| || ||||||||| ||| ||| |||||||||||| |||| ||
Sbjct: 92 ttaggttggtgcaaaagaaactgtggtttttgccattactttcaatggcaaaaaccacaa 33
Query: 73 ttgcttttgtgccaacctaa 92
|| |||||| |||||||||
Sbjct: 32 ttacttttgcaccaacctaa 13
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 atttaggttggcgcaaaagtaattgtggtttt 42
||||||||||| ||||||||||||||||||||
Sbjct: 11 atttaggttggtgcaaaagtaattgtggtttt 42
>28823_hsa-mir-548d-2:mirbase
Length = 97
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||| || ||||||||| ||| ||| |||||||||||| |||| ||
Sbjct: 92 ttaggttggtgcaaaagaaactgtggtttttgccattactttcaatggcaaaaaccacaa 33
Query: 73 ttgcttttgtgccaacctaa 92
|| |||||| |||||||||
Sbjct: 32 ttacttttgcaccaacctaa 13
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 atttaggttggcgcaaaagtaattgtggtttt 42
||||||||||| ||||||||||||||||||||
Sbjct: 11 atttaggttggtgcaaaagtaattgtggtttt 42
>28818_hsa-mir-548c:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||||||||| |||||| ||| ||| ||||| | |||| || ||||
Sbjct: 13 ttaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctcaa 72
Query: 73 ttgcttttgtgccaacctaatactt 97
|| |||||| ||||| ||||||||
Sbjct: 73 ttacttttgcaccaacttaatactt 97
>28819_hsa-mir-548c:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||||||||| |||||| ||| ||| ||||| | |||| || ||||
Sbjct: 13 ttaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctcaa 72
Query: 73 ttgcttttgtgccaacctaatactt 97
|| |||||| ||||| ||||||||
Sbjct: 73 ttacttttgcaccaacttaatactt 97
>28857_hsa-mir-548z:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||||||||| |||||| ||| ||| ||||| | |||| || ||||
Sbjct: 85 ttaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctcaa 26
Query: 73 ttgcttttgtgccaacctaatactt 97
|| |||||| ||||| ||||||||
Sbjct: 25 ttacttttgcaccaacttaatactt 1
>30473_ptr-mir-548c:mirbase
Length = 96
Score = 56.0 bits (28), Expect = 5e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||||||||| |||||| ||| ||| ||||| | |||| || ||||
Sbjct: 13 ttaggttggtgcaaaagtaattgcggtttttgccattactttcagtagcaaaaatctcaa 72
Query: 73 ttgcttttgtgccaacctaatact 96
|| |||||| ||||| |||||||
Sbjct: 73 ttacttttgcaccaacttaatact 96
>27999_mml-mir-548d:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
|||| |||| ||||||| |||||||||||| ||| ||| ||| | |||||||||| ||
Sbjct: 92 ttagtttggtgcaaaagaaattgtggtttttgccattacttttataggcaagaaccacaa 33
Query: 73 ttgcttttgtgccaacctaatac 95
|| |||||| ||||||||||||
Sbjct: 32 ttacttttgcaccaacctaatac 10
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggtt 40
||||||||| ||||||||||||||||||
Sbjct: 13 ttaggttggtgcaaaagtaattgtggtt 40
>28000_mml-mir-548d:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
|||| |||| ||||||| |||||||||||| ||| ||| ||| | |||||||||| ||
Sbjct: 92 ttagtttggtgcaaaagaaattgtggtttttgccattacttttataggcaagaaccacaa 33
Query: 73 ttgcttttgtgccaacctaatac 95
|| |||||| ||||||||||||
Sbjct: 32 ttacttttgcaccaacctaatac 10
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggtt 40
||||||||| ||||||||||||||||||
Sbjct: 13 ttaggttggtgcaaaagtaattgtggtt 40
>28002_mml-mir-548f:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 18 ttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcagttgct 77
|||| ||||||| || ||||||||||||| ||| |||||||||||| | || || || ||
Sbjct: 77 ttggtgcaaaaggaactgtggttttggccattactttcaatggcaaaatccgcaattact 18
Query: 78 tttgtgccaacctaa 92
|||| |||||||||
Sbjct: 17 tttgcaccaacctaa 3
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 atttaggttggcgcaaaagtaattg 35
||||||||||| |||||||||||||
Sbjct: 1 atttaggttggtgcaaaagtaattg 25
>28799_hsa-mir-548aa-1:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcct 47
||||||||| |||||||||||||||||||| ||||
Sbjct: 85 ttaggttggtgcaaaagtaattgtggtttttgcct 51
>28820_hsa-mir-548d-1:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcct 47
||||||||| |||||||||||||||||||| ||||
Sbjct: 13 ttaggttggtgcaaaagtaattgtggtttttgcct 47
>28821_hsa-mir-548d-1:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcct 47
||||||||| |||||||||||||||||||| ||||
Sbjct: 13 ttaggttggtgcaaaagtaattgtggtttttgcct 47
>28803_hsa-mir-548ad:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggtttt 42
||||||||| ||||||||||||||||||||
Sbjct: 4 ttaggttggtgcaaaagtaattgtggtttt 33
>28832_hsa-mir-548h-2:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
||||||||| ||||||||||| | |||||| | | ||| |||||||||||| ||| ||
Sbjct: 4 ttaggttggtgcaaaagtaatcgcggtttttgtcattactttcaatggcaaacaccacaa 63
Query: 73 ttgcttttgtgccaacctaata 94
|| |||||| |||||||||||
Sbjct: 64 ttacttttgcaccaacctaata 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgtggt 39
||||||||| |||||||||||||||||
Sbjct: 83 ttaggttggtgcaaaagtaattgtggt 57
>28855_hsa-mir-548x-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcag 72
|||||||||| | |||||||||| ||||| || ||| ||| |||||||| | || ||
Sbjct: 90 ttaggttggcacgaaagtaattgcagtttttaccattacttttaatggcaaaagccacaa 31
Query: 73 ttgcttttgtgccaacctaata 94
|| |||||||||||||||||||
Sbjct: 30 ttacttttgtgccaacctaata 9
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtgg 38
|||||||||| |||||||||||||||
Sbjct: 11 ttaggttggcacaaaagtaattgtgg 36
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 48.1 bits (24), Expect = 1e-06
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 12 tttaggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctca 71
|||||||||| ||||||||||||| ||||| || ||| |||||||| ||| |||| |
Sbjct: 97 tttaggttggtgcaaaagtaattgcagtttttgctattactttcaatgacaaaaaccgcg 38
Query: 72 gttgcttttgtgccaacctaatac 95
|| |||||| ||||||||||||
Sbjct: 37 attacttttgcaccaacctaatac 14
>28850_hsa-mir-548t:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 aggttggcgcaaaagtaattgtggtttt 42
||||||| ||||||||||||||||||||
Sbjct: 74 aggttggtgcaaaagtaattgtggtttt 47
>28853_hsa-mir-548w:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 18 ttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcagttgct 77
|||| |||||||||||||||| ||| ||| |||| || || ||||| |||| ||||| ||
Sbjct: 72 ttggtgcaaaagtaattgtgggttttgccattatgttgaaaggcaaaaaccgcagttact 13
Query: 78 tttg 81
||||
Sbjct: 12 tttg 9
>28851_hsa-mir-548u:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattg 35
|||||||||||||||||||||||
Sbjct: 80 ttaggttggcgcaaaagtaattg 58
>27996_mml-mir-548a:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 gttggcgcaaaagtaattgtggtttt 42
||||| ||||||||||||||||||||
Sbjct: 17 gttggtgcaaaagtaattgtggtttt 42
>28802_hsa-mir-548ac:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggtttt 42
||||||||| |||||||| |||||||||||
Sbjct: 4 ttaggttggtgcaaaagttattgtggtttt 33
>28828_hsa-mir-548f-4:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 ttaggttggcgcaaaagtaattgtggtttt 42
||||||||| ||||||||||| ||||||||
Sbjct: 14 ttaggttggtgcaaaagtaatagtggtttt 43
>28834_hsa-mir-548h-4:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ttaggttggcgcaaaagtaattgtggtttt 42
||||||||| ||||||||||||| ||||||
Sbjct: 102 ttaggttggtgcaaaagtaattgcggtttt 73
>30470_ptr-mir-548a-1:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 gttggcgcaaaagtaattgtggtttt 42
||||| ||||||||||||||||||||
Sbjct: 16 gttggtgcaaaagtaattgtggtttt 41
>28001_mml-mir-548e:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 14 taggttggcgcaaaagtaattgtggttttggcctttattttcaatggcaagaacctcagt 73
|||||||| ||||||||||||| | ||| || ||| |||||||||||| | | ||||
Sbjct: 14 taggttggtgcaaaagtaattgcgagttttaccattactttcaatggcaaaaccggcagt 73
Query: 74 tgcttttgtgccaacctaatactt 97
| |||||| ||||| ||||||||
Sbjct: 74 tacttttgcaccaacgtaatactt 97
>28805_hsa-mir-548ae-2:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 gcaaaagtaattgtggtttt 42
||||||||||||||||||||
Sbjct: 4 gcaaaagtaattgtggtttt 23
>28807_hsa-mir-548ag-2:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 23 gcaaaagtaattgtggttttggcctttattttcaatggca 62
||||| ||||||| |||| | ||||||| |||||||||||
Sbjct: 61 gcaaaggtaattgaggttcttgcctttactttcaatggca 22
>28844_hsa-mir-548n:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 aggttggcgcaaaagtaattgtgg 38
||||||| ||||||||||||||||
Sbjct: 1 aggttggtgcaaaagtaattgtgg 24
