miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30559_ptr-mir-632:mirbase
Length = 93
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
Query: 61 gtgtctgcttcctgtgggacgtggtggtagccg 93
||||||||||||||||||||| |||||||||||
Sbjct: 61 gtgtctgcttcctgtgggacgcggtggtagccg 93
>31208_ppy-mir-632:mirbase
Length = 94
Score = 163 bits (82), Expect = 3e-41
Identities = 91/94 (96%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 cgcctcctaccgcagtgcctgacgggaggcggagcggggaacgagaccgtcggccatttt 60
Query: 61 gtgtctgcttcctgtgggacgtggtggtagccgt 94
||||||||||||||||||||||||||||| ||||
Sbjct: 61 gtgtctgcttcctgtgggacgtggtggtaaccgt 94
>28067_mml-mir-632:mirbase
Length = 94
Score = 147 bits (74), Expect = 2e-36
Identities = 89/94 (94%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
|||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cgcctcctgccgcagtgcctgacgggaggcggagcggcgaacgaggccgtcggccatttt 60
Query: 61 gtgtctgcttcctgtgggacgtggtggtagccgt 94
||||||||||||||||||||| ||| ||||||||
Sbjct: 61 gtgtctgcttcctgtgggacgcggtcgtagccgt 94
>26893_cfa-mir-632:mirbase
Length = 97
Score = 91.7 bits (46), Expect = 8e-20
Identities = 83/94 (88%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
||||||| ||||||||| ||||||||| | |||||| |||||||| |||||||||||||
Sbjct: 1 cgcctccggccgcagtgcctgacgggag-cagagcggcgaacgagggcgtcggccatttt 59
Query: 61 gtgtctgcttcctgtgggacgtggtggtagccgt 94
||||||| ||||||||||||| ||| || |||||
Sbjct: 60 gtgtctgtttcctgtgggacgcggtcgtggccgt 93
>27245_eca-mir-632:mirbase
Length = 65
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 20 tgacgggaggcggagcggggaacgaggccgtcggccattttgtgtctgcttcctgtggga 79
|||||||||||||||| | |||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 6 tgacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggga 65
>32965_rno-mir-632:mirbase
Length = 78
Score = 60.0 bits (30), Expect = 3e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 39 gaacgaggccgtcggccattttgtgtctgcttcctgtgggacgtggtggt 88
|||||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct: 25 gaacgagggtgtcggccattttgtgtctgtttcctgccggacgtggtggt 74
