miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00935;mir-876;ABRQ01567526.1/1861-1941 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 129 bits (65), Expect = 6e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 1 tgaagtgctgtggatttctttgtgaatcaccatatctaagctaatgtggtggtggtttac 60
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tgaaatgctgtggatttctttgtgaatcaccatatctagactaatgtggtggtggtttac 60
Query: 61 aaagtaattcatagtgcttca 81
|||||||||||||||| ||||
Sbjct: 61 aaagtaattcatagtgtttca 81
>RF00935;mir-876;CAAA01174529.1/8506-8586 10090:Mus musculus
(house mouse)
Length = 81
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 5 gtgctgtggatttctttgtgaatcaccatatctaagctaatgtggtggtggtttacaaag 64
||||| ||||||||| |||||||||| ||||| || ||| |||||| |||||||||||||
Sbjct: 5 gtgctatggatttctctgtgaatcactatatcaaatctagtgtggtagtggtttacaaag 64
Query: 65 taattcatagtgcttca 81
|||||||||||||||||
Sbjct: 65 taattcatagtgcttca 81
>RF00935;mir-876;AAGW01639530.1/1761-1843 9986:Oryctolagus
cuniculus (rabbit)
Length = 83
Score = 87.7 bits (44), Expect = 2e-17
Identities = 73/80 (91%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 4 agtgctgtggatttcttt-gtgaatcaccatatctaagctaatgtggt-ggtggtttaca 61
|||||||||||||||||| ||||||||||||||||||||||||| ||| || |||| ||
Sbjct: 4 agtgctgtggatttcttttgtgaatcaccatatctaagctaatggggtgggcggttacca 63
Query: 62 aagtaattcatagtgcttca 81
| ||||||||||||||||||
Sbjct: 64 aggtaattcatagtgcttca 83
