miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00912;mir-877;AACZ02070205.1/12149-12234 9598:Pan troglodytes
(chimpanzee)
Length = 86
Score = 163 bits (82), Expect = 4e-40
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagaggagatggcgcaggggacatgggcaaagacttgggggttcctgggaccctcagac 60
Query: 61 gtgtgtcctcttctccctcctcccag 86
||||||||||||||||||||||||||
Sbjct: 61 gtgtgtcctcttctccctcctcccag 86
>RF00912;mir-877;AAWR02009855.1/2715-2800 9796:Equus caballus
(horse)
Length = 86
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||
Sbjct: 1 gtagaggagatggcgcaagggacacaaacgaagacttgggggttcctgggaccttcagac 60
Query: 61 gtgtgtcctcttctccctcctcccag 86
| |||||||||||||| ||||||||
Sbjct: 61 atatgtcctcttctcccccctcccag 86
>RF00912;mir-877;ABRO01157337.1/1763-1847 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 99.6 bits (50), Expect = 6e-21
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
|||||||||||||||||||||||||| || |||||| ||||| || || ||||||||||
Sbjct: 1 gtagaggagatggcgcaggggacacgagctaagactcaggggtccccgg-accctcagac 59
Query: 61 gtgtgtcctcttctccctcctcccag 86
|||||||||||||||||||||||||
Sbjct: 60 atgtgtcctcttctccctcctcccag 85
>RF00912;mir-877;ABRN01266617.1/6975-7059 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 85
Score = 85.7 bits (43), Expect = 8e-17
Identities = 79/87 (90%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggacc-ctcaga 59
||||||||||||||||||||||||||||| ||||| ||||| |||||||||| | |||
Sbjct: 1 gtagaggagatggcgcaggggacacgggctaagac-tggggactcctgggacctcgcag- 58
Query: 60 cgtgtgtcctcttctccctcctcccag 86
| |||||||||||||||||||||||||
Sbjct: 59 catgtgtcctcttctccctcctcccag 85
>RF00912;mir-877;AACN010926608.1/195-110 9615:Canis lupus
familiaris (dog)
Length = 86
Score = 85.7 bits (43), Expect = 8e-17
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
|||||||||||||||||||||||| |||| ||||||||| |||||| | ||| ||||
Sbjct: 1 gtagaggagatggcgcaggggacatgggctgagacttgggagttcctagaacctctagac 60
Query: 61 gtgtgtcctcttctccctcctcc 83
||||||||||||||||||||||
Sbjct: 61 atgtgtcctcttctccctcctcc 83
>RF00912;mir-877;ABRP01070060.1/1289-1368 132908:Pteropus vampyrus
(large flying fox)
Length = 80
Score = 75.8 bits (38), Expect = 8e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
|||||||||||||||||||||| |||| | |||||||||||||||||| | | ||||||
Sbjct: 1 gtagaggagatggcgcaggggatacggactaagacttgggggttcctgcaatcttcagac 60
Query: 61 gtgtgtcctc 70
|||||||||
Sbjct: 61 ctgtgtcctc 70
>RF00912;mir-877;AB113357.1/20621-20705 9823:Sus scrofa (pig)
Length = 85
Score = 75.8 bits (38), Expect = 8e-14
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
||||||||||||||||||||||||||||| ||||| | |||||| |||||||| | |||
Sbjct: 1 gtagaggagatggcgcaggggacacgggccaagac-taggggttgctgggacctcccgac 59
Query: 61 gtgtgtcctcttctccctcctcccag 86
| |||||| |||||||||||||||
Sbjct: 60 ataggtcctcctctccctcctcccag 85
>RF00912;mir-877;AAIY01783760.1/194-278 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 75.8 bits (38), Expect = 8e-14
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
||||||||||||||||||||||||||||| |||| ||||| | ||||| |||| ||
Sbjct: 1 gtagaggagatggcgcaggggacacgggcggagac-tggggctggctggggtcctccaac 59
Query: 61 gtgtgtcctcttctccctcctcccag 86
|||||||||||||||||||||||||
Sbjct: 60 atgtgtcctcttctccctcctcccag 85
>RF00912;mir-877;ABRQ01006307.1/5393-5478 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctgggaccctcagac 60
||||||||||||||||||||||||| ||| || ||| ||||||| |||| | ||
Sbjct: 1 gtagaggagatggcgcaggggacacaggctgtaacacagggactcctggggcccttaaac 60
Query: 61 gtgtgtcctcttctccctcctcccag 86
|||||||||||||||||||||||||
Sbjct: 61 atgtgtcctcttctccctcctcccag 86
>RF00912;mir-877;CAAA01217351.1/14434-14518 10090:Mus musculus
(house mouse)
Length = 85
Score = 56.0 bits (28), Expect = 7e-08
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgggcaaagacttgggggttcctg-ggaccctcaga 59
||||||||||||||||||||||||| | | | |||| |||| ||| ||||||| ||
Sbjct: 1 gtagaggagatggcgcaggggacacaaggtaggccttgcgggt--ctgtggacccttgga 58
Query: 60 cgtgtgtcctcttctccctcctcccag 86
| |||||||||||||||||||||||||
Sbjct: 59 catgtgtcctcttctccctcctcccag 85
>RF00912;mir-877;ABRR01415494.1/957-1038 30538:Lama pacos (alpaca)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gtagaggagatggcgcaggggacacgg 27
|||||||||||||||||||||||||||
Sbjct: 1 gtagaggagatggcgcaggggacacgg 27
