miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30627_ptr-mir-942:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 attaggagagtatcttctctgttttggccatgtgtgtactcacagcccctcacacatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attaggagagtatcttctctgttttggccatgtgtgtactcacagcccctcacacatggc 60
Query: 61 cgaaacagagaagttactttcctaa 85
|||||||||||||||||||||||||
Sbjct: 61 cgaaacagagaagttactttcctaa 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 51 cacacatggccgaaacagagaagttactttcctaat 86
||||||||||| ||||||||||| |||| |||||||
Sbjct: 36 cacacatggccaaaacagagaagatactctcctaat 1
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2 ttaggagagtatcttctctgttttggccatgtgtg 36
|||||| |||| ||||||||||| |||||||||||
Sbjct: 85 ttaggaaagtaacttctctgtttcggccatgtgtg 51
>31275_ppy-mir-942:mirbase
Length = 86
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 attaggagagtatcttctctgttttggccatgtgtgtactcacagcccctcacacatggc 60
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 attaggagagtaccttctctgttttggccatgggtgtactcacagcccctcacacatggc 60
Query: 61 cgaaacagagaagttactttcctaat 86
||||||||||||||||||||||||||
Sbjct: 61 cgaaacagagaagttactttcctaat 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 attaggagagtatcttctctgttttggccatgtgtg 36
||||||| |||| ||||||||||| |||||||||||
Sbjct: 86 attaggaaagtaacttctctgtttcggccatgtgtg 51
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 55 catggccgaaacagagaagttactttcctaat 86
||||||| ||||||||||| |||| |||||||
Sbjct: 32 catggccaaaacagagaaggtactctcctaat 1
>28151_mml-mir-942:mirbase
Length = 86
Score = 139 bits (70), Expect = 4e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 attaggagagtatcttctctgttttggccatgtgtgtactcacagcccctcacacatggc 60
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 attaagagagtaccttctctgttttggccatgtgtgtactcacagcccctcacacgtggc 60
Query: 61 cgaaacagagaagttactttcctaat 86
||||||||||||| ||||||||||||
Sbjct: 61 cgaaacagagaaggtactttcctaat 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 51 cacacatggccgaaacagagaagttact 78
||||||||||| ||||||||||| ||||
Sbjct: 36 cacacatggccaaaacagagaaggtact 9
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 1 attaggagagtatcttctctgttttggccatgtgtg 36
||||||| |||| ||||||||||| ||||| |||||
Sbjct: 86 attaggaaagtaccttctctgtttcggccacgtgtg 51
