miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02014;mir-1178;AANU01246374.1/48996-48886 9544:Macaca mulatta
(rhesus monkey)
Length = 111
Score = 161 bits (81), Expect = 2e-39
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 3 gttggctggcagaggaagggaagggtccagggtcagctgagcatgccctcaggttgctca 62
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 13 gttggctggcagaggaagggaagggtccggggtcagctgagcatgccctcacgttgctca 72
Query: 63 ctgttcttccctagaatgtcaggtgatgt 91
|||||||||||||||||||||||||||||
Sbjct: 73 ctgttcttccctagaatgtcaggtgatgt 101
>RF02014;mir-1178;AADB02216940.1/526-416 9606:Homo sapiens (human)
Length = 111
Score = 119 bits (60), Expect = 6e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 gcgttggctggcagaggaagggaagggtccagggtcagctgagcatgccctcaggttgct 60
||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11 gcgttggctggcacagtaaaggaagggtccagggtcacctgagcatgccctcaggttgct 70
Query: 61 cactgttcttccctagaatgtcag 84
| |||||||| |||||||||||||
Sbjct: 71 ccctgttcttacctagaatgtcag 94
>RF02014;mir-1178;ABRT010028237.1/2033-1923 9478:Tarsius syrichta
(Philippine tarsier)
Length = 111
Score = 73.8 bits (37), Expect = 3e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 15 aggaagggaagggtccagggtcagctgagcatgccctcaggttgctcactgttcttccct 74
|||||| ||||||| |||| ||||| ||| || | ||||||||||||||| |||| |||
Sbjct: 25 aggaagagaagggttcaggatcagccgagggtggcttcaggttgctcactgctctttcct 84
Query: 75 agaatgtcaggtgatgt 91
|||||||||||||||||
Sbjct: 85 agaatgtcaggtgatgt 101
>RF02014;mir-1178;ABDC01031212.1/7174-7064 30608:Microcebus murinus
(gray mouse lemur)
Length = 111
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 20 gggaagggtccagggtcagctgagcatgccctcaggttgctcactgttcttccctagaat 79
|||||||||||||||||||| ||||||| | ||||||| | | ||| ||| ||||||||
Sbjct: 30 gggaagggtccagggtcagccgagcatgtcttcaggttaccctctgctctgtcctagaat 89
Query: 80 gtcaggtgatgt 91
||||||||||||
Sbjct: 90 gtcaggtgatgt 101
>RF02014;mir-1178;AAGV020043112.1/947-835 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 113
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 51 tcaggttgctcactgttcttccctagaatgtcaggtgatgt 91
|||||||||| |||| |||||||||||||| ||||||||||
Sbjct: 63 tcaggttgctaactgctcttccctagaatgccaggtgatgt 103
>RF02014;mir-1178;ABRP01138983.1/6461-6351 132908:Pteropus vampyrus
(large flying fox)
Length = 111
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 11 gcagaggaagggaagggtccagggtcagctgagcatgccctcaggttgctcactgttctt 70
|||||||||||||| |||||| | ||||| |||| | |||||||| |||| | | ||
Sbjct: 21 gcagaggaagggaatggtccaagatcagccaagcaagttttcaggttgttcaccgctttt 80
Query: 71 ccctagaatgtcaggtgatgt 91
|||||||||||||||||||||
Sbjct: 81 ccctagaatgtcaggtgatgt 101
>RF02014;mir-1178;ABRN01406596.1/4084-3974 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 111
Score = 58.0 bits (29), Expect = 2e-08
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 3 gttggctggcagaggaagggaagggtccagggtcagctgagcatgccctcaggttgctca 62
||||||||||||||| |||||| ||||||| || || ||| || |||||||| |||
Sbjct: 13 gttggctggcagaggcagggaacggtccagcatcggccgagtgtgtgttcaggttgttca 72
Query: 63 ctgttcttccctagaatgtcaggtgatgt 91
||| | |||||||||||||||||| ||||
Sbjct: 73 ctgcttttccctagaatgtcaggtcatgt 101
>RF02014;mir-1178;ACBE01380273.1/1064-1172 9685:Felis catus
(domestic cat)
Length = 109
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 51 tcaggttgctcactgttcttccctagaatgtcaggtgatgt 91
|||||||| |||||| | ||||| |||||||||||||||||
Sbjct: 59 tcaggttgttcactgcttttccccagaatgtcaggtgatgt 99
>RF02014;mir-1178;AAQQ01619158.1/1300-1197 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 51 tcaggttgctcactgttcttccctagaatgtcaggtgatgt 91
||||| || |||||| ||| |||||||||||||||||||||
Sbjct: 54 tcagggtgttcactgctctcccctagaatgtcaggtgatgt 94
>RF02014;mir-1178;AAPE01065295.1/1454-1343 59463:Myotis lucifugus
(little brown bat)
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 ttccctagaatgtcaggtgatgt 91
|||||||||||||||||||||||
Sbjct: 80 ttccctagaatgtcaggtgatgt 102
>RF02014;mir-1178;AAPY01651911.1/3160-3048 37347:Tupaia belangeri
(northern tree shrew)
Length = 113
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 gttcttccctagaatgtcaggtgatgt 91
||||||| |||||||||||||||||||
Sbjct: 77 gttcttctctagaatgtcaggtgatgt 103
