miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31332_ppy-mir-1273:mirbase
Length = 103
Score = 115 bits (58), Expect = 6e-27
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 1 tgaggcaggagaattgcttgaacccaggaagtggaggctgcagtgagccgagatcgagcc 60
||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||| |||
Sbjct: 1 tgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcacgcc 60
Query: 61 actgtactccagcctgggtgacacagcgagactc 94
|||| |||||||||||||||||| ||| ||||||
Sbjct: 61 actgcactccagcctgggtgacagagcaagactc 94
>29124_hsa-mir-1273:mirbase
Length = 103
Score = 99.6 bits (50), Expect = 4e-22
Identities = 83/94 (88%)
Strand = Plus / Plus
Query: 1 tgaggcaggagaattgcttgaacccaggaagtggaggctgcagtgagccgagatcgagcc 60
||||||||||||||||||||||||| || ||||||| ||||||||||| |||| | |||
Sbjct: 1 tgaggcaggagaattgcttgaacccgggtggtggaggttgcagtgagccaagattgcgcc 60
Query: 61 actgtactccagcctgggtgacacagcgagactc 94
|||| ||||||||||||| |||| ||| ||||||
Sbjct: 61 actgcactccagcctgggcgacaaagcaagactc 94
>30688_ptr-mir-1273:mirbase
Length = 102
Score = 83.8 bits (42), Expect = 2e-17
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 1 tgaggcaggagaattgcttgaacccaggaagtggaggctgcagtgagccgagatcgagcc 60
|||||||||| ||||||||||||| || ||||||| ||||||||||| |||| | |||
Sbjct: 1 tgaggcaggaaaattgcttgaacctgggtggtggaggttgcagtgagccaagattgcgcc 60
Query: 61 actgtactccagcctgggtgacacagcgagactc 94
|||| ||||||||||||| |||| ||| ||||||
Sbjct: 61 actgcactccagcctgggcgacaaagcaagactc 94
>29126_hsa-mir-1273d:mirbase
Length = 86
Score = 81.8 bits (41), Expect = 9e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 11 gaattgcttgaacccaggaagtggaggctgcagtgagccgagatcgagccactgtactcc 70
|||| ||||||||||| || || |||||||||||||||| |||||| ||||||| ||| |
Sbjct: 1 gaatcgcttgaacccatgaggttgaggctgcagtgagccaagatcgtgccactgcacttc 60
Query: 71 agcctgggtgaca 83
|||||||||||||
Sbjct: 61 agcctgggtgaca 73
>29659_hsa-mir-4459:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 3e-07
Identities = 47/53 (88%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 26 aggaagtggaggctgcagtgagccgagatcgagccactgtactccagcctggg 78
|||| ||||||| ||||||||||| |||||| | ||||| |||||||||||||
Sbjct: 14 aggaggtggaggttgcagtgagccaagatcgtggcactg-actccagcctggg 65
>34143_ssc-mir-1285:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 57 agccactgtactccagcctgggtgacacagcgagac 92
|||||||||||||||||||||| ||| ||||||||
Sbjct: 32 agccactgtactccagcctgggcaacatagcgagac 67
>31147_ppy-mir-566:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 8e-05
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 4 ggcaggagaattgcttgaacccaggaagtggaggctgcagtgagc 48
||||| |||||||||||||||| ||| | | ||| ||||||||||
Sbjct: 46 ggcagcagaattgcttgaacccgggaggcgaaggttgcagtgagc 90
