miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31358_ppy-mir-1302-3:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 aacaaataatttggtaatatatgtatggcccacacaatatttaggacaacaatatttggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacaaataatttggtaatatatgtatggcccacacaatatttaggacaacaatatttggg 60
Query: 61 acatacttatgctaaaaaagtatttgttga 90
||||||||||||||||||||||||||||||
Sbjct: 61 acatacttatgctaaaaaagtatttgttga 90
>30719_ptr-mir-1302-6:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 aacaaataatttggtaatatatgtatggcccacacaatatttaggacaacaatatttggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacaaataatttggtaatatatgtatggcccacacaatatttaggacaacaatatttggg 60
Query: 61 acatacttatgctaaaaaagtatttgttg 89
|||||||||||||||||||||||||||||
Sbjct: 61 acatacttatgctaaaaaagtatttgttg 89
>27303_eca-mir-1302d-4:mirbase
Length = 104
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 50 caatatttgggacatacttatgctaaaaaa 79
||||||||||||||||||||||||||||||
Sbjct: 52 caatatttgggacatacttatgctaaaaaa 81
>29159_hsa-mir-1302-1:mirbase
Length = 143
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 49 acaatatttgggacatacttatgctaaaaa 78
||||||||||||||||||||||||||||||
Sbjct: 68 acaatatttgggacatacttatgctaaaaa 97
>30714_ptr-mir-1302-1:mirbase
Length = 142
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 49 acaatatttgggacatacttatgctaaaaa 78
||||||||||||||||||||||||||||||
Sbjct: 68 acaatatttgggacatacttatgctaaaaa 97
>29168_hsa-mir-1302-8:mirbase
Length = 128
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 tatttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||||
Sbjct: 63 tatttgggacatacttatgctaaaaaa 89
>30721_ptr-mir-1302-8:mirbase
Length = 127
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 tatttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||||
Sbjct: 63 tatttgggacatacttatgctaaaaaa 89
>31360_ppy-mir-1302-5:mirbase
Length = 128
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 tatttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||||
Sbjct: 63 tatttgggacatacttatgctaaaaaa 89
>29164_hsa-mir-1302-4:mirbase
Length = 150
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 54 atttgggacatacttatgctaaaaaagtatttgt 87
|||||||||||||||||||||||| | |||||||
Sbjct: 75 atttgggacatacttatgctaaaatattatttgt 108
>29167_hsa-mir-1302-7:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 50 caatatttgggacatacttatgctaaaaaa 79
||||| ||||||||||||||||||||||||
Sbjct: 33 caataattgggacatacttatgctaaaaaa 62
>30720_ptr-mir-1302-7:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 50 caatatttgggacatacttatgctaaaaaa 79
||||| ||||||||||||||||||||||||
Sbjct: 33 caataattgggacatacttatgctaaaaaa 62
>29160_hsa-mir-1302-10:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>29161_hsa-mir-1302-11:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>29162_hsa-mir-1302-2:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>29163_hsa-mir-1302-3:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>29169_hsa-mir-1302-9:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>30715_ptr-mir-1302-2:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>30716_ptr-mir-1302-3:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 71 tttgggacatacttatgctaaaaaa 95
>30717_ptr-mir-1302-4:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>30718_ptr-mir-1302-5:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>31356_ppy-mir-1302-1:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>31357_ppy-mir-1302-2:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaaaa 79
|||||||||||||||||||||||||
Sbjct: 72 tttgggacatacttatgctaaaaaa 96
>31359_ppy-mir-1302-4:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 ttgggacatacttatgctaaaaaa 79
||||||||||||||||||||||||
Sbjct: 40 ttgggacatacttatgctaaaaaa 63
>29165_hsa-mir-1302-5:mirbase
Length = 150
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tttgggacatacttatgctaaaa 77
|||||||||||||||||||||||
Sbjct: 76 tttgggacatacttatgctaaaa 98
>27301_eca-mir-1302b-2:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 caatatttgggacatacttat 70
|||||||||||||||||||||
Sbjct: 68 caatatttgggacatacttat 88
>27302_eca-mir-1302c-5:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 50 caatatttgggacatacttatgctaaaaa 78
||||||||| ||||||||||| |||||||
Sbjct: 61 caatatttgcgacatacttatactaaaaa 89
>27300_eca-mir-1302-1:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 54 atttgggacatacttatgctaaaa 77
||||||||||||||||| ||||||
Sbjct: 31 atttgggacatacttatactaaaa 54
