miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;AANU01285982.1/9962-9671 9544:Macaca mulatta
(rhesus monkey)
Length = 292
Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 42 aaaaattcaggccaggcacagtggctcatgcctgta 77
||||||| ||||| ||||||||||||||||||||||
Sbjct: 166 aaaaattaaggccgggcacagtggctcatgcctgta 201
>RF00017;Metazoa_SRP;ABSL01056788.1/2749-2468 9606:Homo sapiens
(human)
Length = 282
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
||||||||||||||||||||||||||
Sbjct: 166 gccaggcacagtggctcatgcctgta 191
>RF00017;Metazoa_SRP;AADC01138791.1/467660-467394 9606:Homo sapiens
(human)
Length = 267
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
||||||||||||||||||||||||||
Sbjct: 229 gccaggcacagtggctcatgcctgta 254
>RF00017;Metazoa_SRP;ABBA01005882.1/5078-5354 9606:Homo sapiens
(human)
Length = 277
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 49 caggccaggcacagtggctcatgcctgta 77
||||||||||||||||||||| |||||||
Sbjct: 157 caggccaggcacagtggctcaagcctgta 185
>RF00017;Metazoa_SRP;AC200148.4/164772-164500 9601:Pongo abelii
(Sumatran orangutan)
Length = 273
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 aggccaggcacagtggctcatgcctgta 77
||||||||| ||||||||||||||||||
Sbjct: 154 aggccaggcgcagtggctcatgcctgta 181
>RF00017;Metazoa_SRP;ABGA01062811.1/1989-1705 9601:Pongo abelii
(Sumatran orangutan)
Length = 285
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 42 aaaaattcaggccaggcacagtggctcatgcctgta 77
||||||| ||||| ||||| ||||||||||||||||
Sbjct: 151 aaaaattaaggccgggcacggtggctcatgcctgta 186
>RF00017;Metazoa_SRP;AACZ02021234.1/28696-28417 9598:Pan troglodytes
(chimpanzee)
Length = 280
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 42 aaaaattcaggccaggcacagtggctcatgcctgta 77
|||| ||||||||||| ||||||||||||||||||
Sbjct: 154 aaaatttcaggccaggtgcagtggctcatgcctgta 189
>RF00017;Metazoa_SRP;ABSL01002126.1/64865-64580 9606:Homo sapiens
(human)
Length = 286
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 42 aaaaattcaggccaggcacagtggctcatgcctgta 77
||||||| ||||| ||||| ||||||||||||||||
Sbjct: 152 aaaaattaaggccgggcacggtggctcatgcctgta 187
>RF00017;Metazoa_SRP;AADD01013186.1/4781-5069 9606:Homo sapiens
(human)
Length = 289
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 aggccaggcacagtggctcatgcctgta 77
||||||||| ||||||||||||||||||
Sbjct: 171 aggccaggcgcagtggctcatgcctgta 198
>RF00017;Metazoa_SRP;AAFR03003410.1/173398-173097
13616:Monodelphis domestica (gray short-tailed opossum)
Length = 302
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tataggcatgtgccaccacacct 23
|||||||||||||||||||||||
Sbjct: 26 tataggcatgtgccaccacacct 4
>RF00017;Metazoa_SRP;ABRT010613976.1/686-985 9478:Tarsius syrichta
(Philippine tarsier)
Length = 300
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 aggcatgtgccaccacacctggc 26
|||||||||||||||||||||||
Sbjct: 23 aggcatgtgccaccacacctggc 1
>RF00017;Metazoa_SRP;ABGA01319971.1/6088-5802 9601:Pongo abelii
(Sumatran orangutan)
Length = 287
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 ggccaggcacagtggctcatgcctgta 77
||||||||||||||||||| |||||||
Sbjct: 170 ggccaggcacagtggctcacgcctgta 196
>RF00017;Metazoa_SRP;AACZ02003476.1/4813-4556 9598:Pan troglodytes
(chimpanzee)
Length = 258
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 ggccaggcacagtggctcatgcctgta 77
|||||||| ||||||||||||||||||
Sbjct: 211 ggccaggcgcagtggctcatgcctgta 237
>RF00017;Metazoa_SRP;AADB02037511.1/59789-60079 9606:Homo sapiens
(human)
Length = 291
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 aggcatgtgccaccacacctggc 26
|||||||||||||||||||||||
Sbjct: 23 aggcatgtgccaccacacctggc 1
>RF00017;Metazoa_SRP;ABQO010364322.1/2332-2615 9315:Macropus
eugenii (tammar wallaby)
Length = 284
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 tataggcatgtgccaccacacctggc 26
|||||||||||||||||| |||||||
Sbjct: 26 tataggcatgtgccaccatacctggc 1
>RF00017;Metazoa_SRP;AAFR03002631.1/33883-34164 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 282
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 ggcatgtgccaccacacctggc 26
||||||||||||||||||||||
Sbjct: 22 ggcatgtgccaccacacctggc 1
>RF00017;Metazoa_SRP;AAFR03011982.1/293433-293153
13616:Monodelphis domestica (gray short-tailed opossum)
Length = 281
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 tataggcatgtgccaccacacctggc 26
||||||||||||||||||||| ||||
Sbjct: 26 tataggcatgtgccaccacacttggc 1
>RF00017;Metazoa_SRP;ABGA01037467.1/10550-10834 9601:Pongo abelii
(Sumatran orangutan)
Length = 285
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
|||||||||||||||||| |||||||
Sbjct: 1 gccaggcacagtggctcacgcctgta 26
>RF00017;Metazoa_SRP;ABGA01183034.1/26107-25804 9601:Pongo abelii
(Sumatran orangutan)
Length = 304
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 ggcacagtggctcatgcctgta 77
||||||||||||||||||||||
Sbjct: 5 ggcacagtggctcatgcctgta 26
>RF00017;Metazoa_SRP;ABGA01049563.1/12651-12362 9601:Pongo abelii
(Sumatran orangutan)
Length = 290
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
|||||||||||||||||| |||||||
Sbjct: 1 gccaggcacagtggctcacgcctgta 26
>RF00017;Metazoa_SRP;AC189688.3/127858-127576 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
|||||||||||||||||| |||||||
Sbjct: 1 gccaggcacagtggctcacgcctgta 26
>RF00017;Metazoa_SRP;AACZ02150364.1/46624-46905 9598:Pan
troglodytes (chimpanzee)
Length = 282
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
||||||| ||||||||||||||||||
Sbjct: 1 gccaggcgcagtggctcatgcctgta 26
>RF00017;Metazoa_SRP;AADC01108767.1/39879-40163 9606:Homo sapiens
(human)
Length = 285
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
||||||||||||||| ||||||||||
Sbjct: 1 gccaggcacagtggcacatgcctgta 26
>RF00017;Metazoa_SRP;AACC02000046.1/139313-139595 9606:Homo
sapiens (human)
Length = 283
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 ggcacagtggctcatgcctgta 77
||||||||||||||||||||||
Sbjct: 5 ggcacagtggctcatgcctgta 26
>RF00017;Metazoa_SRP;CABD01009396.1/7648-7364 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 285
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
||||||||||||||| ||||||||||
Sbjct: 1 gccaggcacagtggcacatgcctgta 26
>RF00017;Metazoa_SRP;CABD01346449.1/2033-1741 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 293
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
||||||| ||||||||||||||||||
Sbjct: 229 gccaggcgcagtggctcatgcctgta 254
>RF00017;Metazoa_SRP;AANU01208877.1/1615-1335 9544:Macaca mulatta
(rhesus monkey)
Length = 281
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
|||||||||||||||||| |||||||
Sbjct: 1 gccaggcacagtggctcacgcctgta 26
>RF00017;Metazoa_SRP;AANU01112180.1/1126-846 9544:Macaca mulatta
(rhesus monkey)
Length = 281
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
||||||| ||||||||||||||||||
Sbjct: 1 gccaggcgcagtggctcatgcctgta 26
>RF00017;Metazoa_SRP;AANU01228928.1/5995-5700 9544:Macaca mulatta
(rhesus monkey)
Length = 296
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
||||||||||||||| ||||||||||
Sbjct: 1 gccaggcacagtggcgcatgcctgta 26
>RF00017;Metazoa_SRP;AANU01209541.1/6074-5793 9544:Macaca mulatta
(rhesus monkey)
Length = 282
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gccaggcacagtggctcatgcctgta 77
||||||| ||||||||||||||||||
Sbjct: 1 gccaggcgcagtggctcatgcctgta 26
>RF00017;Metazoa_SRP;ABGA01004371.1/4601-4876 9601:Pongo abelii
(Sumatran orangutan)
Length = 276
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 53 ccaggcacagtggctcatgcctgta 77
||||||| |||||||||||||||||
Sbjct: 161 ccaggcatagtggctcatgcctgta 185
>RF00017;Metazoa_SRP;ABGA01162754.1/15088-15368 9601:Pongo abelii
(Sumatran orangutan)
Length = 281
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 caggcacagtggctcatgcct 74
|||||||||||||||||||||
Sbjct: 170 caggcacagtggctcatgcct 190
>RF00017;Metazoa_SRP;ABBA01074389.1/24711-24998 9606:Homo sapiens
(human)
Length = 288
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ggcacagtggctcatgcctgt 76
|||||||||||||||||||||
Sbjct: 5 ggcacagtggctcatgcctgt 25
>RF00017;Metazoa_SRP;AANU01210593.1/5048-5324 9544:Macaca mulatta
(rhesus monkey)
Length = 277
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 caggccaggcacagtggctca 69
|||||||||||||||||||||
Sbjct: 185 caggccaggcacagtggctca 205
