miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29237_hsa-mir-3118-1:mirbase
Length = 75
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 61
Query: 61 attcttgtagtgt 73
|||||||||||||
Sbjct: 62 attcttgtagtgt 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 64/74 (86%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 1 acactacaataattttcataatgcaatcacaca-taatcactatgtgactgcattatgaa 59
||||||||| ||||||||||||||| ||||| | | || | | ||||| |||||||||||
Sbjct: 74 acactacaagaattttcataatgcagtcacatagtgatta-tgtgtgattgcattatgaa 16
Query: 60 aattcttgtagtgt 73
|||| |||||||||
Sbjct: 15 aattattgtagtgt 2
>29239_hsa-mir-3118-3:mirbase
Length = 75
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 61
Query: 61 attcttgtagtgt 73
|||||||||||||
Sbjct: 62 attcttgtagtgt 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 64/74 (86%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 1 acactacaataattttcataatgcaatcacaca-taatcactatgtgactgcattatgaa 59
||||||||| ||||||||||||||| ||||| | | || | | ||||| |||||||||||
Sbjct: 74 acactacaagaattttcataatgcagtcacatagtgatta-tgtgtgattgcattatgaa 16
Query: 60 aattcttgtagtgt 73
|||| |||||||||
Sbjct: 15 aattattgtagtgt 2
>29240_hsa-mir-3118-4:mirbase
Length = 75
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 3 actacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaaat 62
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 4 actacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaaaat 63
Query: 63 tcttgtagtgt 73
|||| ||||||
Sbjct: 64 tcttctagtgt 74
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 43 tgtgactgcattatgaaaattcttgtagt 71
||||| ||||||||||||||| |||||||
Sbjct: 32 tgtgattgcattatgaaaattattgtagt 4
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1 acactacaataattttcataatgcaatcacac 32
|||||| || ||||||||||||||| ||||||
Sbjct: 74 acactagaagaattttcataatgcagtcacac 43
>29242_hsa-mir-3118-6:mirbase
Length = 75
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 3 actacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaaat 62
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 4 actacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaaaat 63
Query: 63 tcttgtagtgt 73
|||| ||||||
Sbjct: 64 tcttctagtgt 74
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 43 tgtgactgcattatgaaaattcttgtagt 71
||||| ||||||||||||||| |||||||
Sbjct: 32 tgtgattgcattatgaaaattattgtagt 4
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1 acactacaataattttcataatgcaatcacac 32
|||||| || ||||||||||||||| ||||||
Sbjct: 74 acactagaagaattttcataatgcagtcacac 43
>29241_hsa-mir-3118-5:mirbase
Length = 76
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 5 tacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaaattc 64
||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 7 tacaataatattcataatgcaatcacacacaatcaccatgtgactgcattatgaaaattc 66
Query: 65 ttgtagtgt 73
|| ||||||
Sbjct: 67 ttctagtgt 75
Score = 38.2 bits (19), Expect = 8e-04
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 1 acactacaataattttcataatgcaatcaca 31
|||||| || ||||||||||||||| |||||
Sbjct: 75 acactagaagaattttcataatgcagtcaca 45
