miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29240_hsa-mir-3118-4:mirbase
Length = 75
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 catactacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catactacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaa 60
Query: 61 aattcttctagtgtg 75
|||||||||||||||
Sbjct: 61 aattcttctagtgtg 75
>29241_hsa-mir-3118-5:mirbase
Length = 76
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 6 tacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaaaattc 65
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 tacaataatattcataatgcaatcacacacaatcaccatgtgactgcattatgaaaattc 66
Query: 66 ttctagtgtg 75
||||||||||
Sbjct: 67 ttctagtgtg 76
>29237_hsa-mir-3118-1:mirbase
Length = 75
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 4 actacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaaaat 63
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 4 actacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaaat 63
Query: 64 tcttctagtgtg 75
|||| |||||||
Sbjct: 64 tcttgtagtgtg 75
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 43 gtgtgactgcattatgaaaattcttctagtgtg 75
|||||| ||||||||||||||| || |||||||
Sbjct: 33 gtgtgattgcattatgaaaattattgtagtgtg 1
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 4 actacaataattttcataatgcaatcaca 32
||||||| ||||||||||||||| |||||
Sbjct: 72 actacaagaattttcataatgcagtcaca 44
>29239_hsa-mir-3118-3:mirbase
Length = 75
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 4 actacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaaaat 63
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 4 actacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaaat 63
Query: 64 tcttctagtgtg 75
|||| |||||||
Sbjct: 64 tcttgtagtgtg 75
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 43 gtgtgactgcattatgaaaattcttctagtgtg 75
|||||| ||||||||||||||| || |||||||
Sbjct: 33 gtgtgattgcattatgaaaattattgtagtgtg 1
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 4 actacaataattttcataatgcaatcaca 32
||||||| ||||||||||||||| |||||
Sbjct: 72 actacaagaattttcataatgcagtcaca 44
>29238_hsa-mir-3118-2:mirbase
Length = 73
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 4 actacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaaaat 63
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 3 actacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaaat 62
Query: 64 tcttctagtgt 74
|||| ||||||
Sbjct: 63 tcttgtagtgt 73
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 4 actacaataattttcataatgcaatcaca 32
||||||| ||||||||||||||| |||||
Sbjct: 71 actacaagaattttcataatgcagtcaca 43
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 43 gtgtgactgcattatgaaaattcttctagtgt 74
|||||| ||||||||||||||| || ||||||
Sbjct: 32 gtgtgattgcattatgaaaattattgtagtgt 1
