miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28522_hsa-mir-203:mirbase
Length = 110
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1 gcgcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gcgcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaact 40
Query: 61 gttaagaaccactggacccagcgcgc 86
||||||||||||||||||||||||||
Sbjct: 39 gttaagaaccactggacccagcgcgc 14
>29377_hsa-mir-3545:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 gcgcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaact 60
Query: 61 gttaagaaccactggacccagcgcgc 86
||||||||||||||||||||||||||
Sbjct: 61 gttaagaaccactggacccagcgcgc 86
>27800_mml-mir-203:mirbase
Length = 110
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 3 gcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgt 38
Query: 63 taagaaccactggacccagcgcgc 86
||||||||||||||||||||||||
Sbjct: 37 taagaaccactggacccagcgcgc 14
>30899_ppy-mir-203:mirbase
Length = 110
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 3 gcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgt 38
Query: 63 taagaaccactggacccagcgcgc 86
||||||||||||||||||||||||
Sbjct: 37 taagaaccactggacccagcgcgc 14
>30281_ptr-mir-203:mirbase
Length = 109
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Minus
Query: 1 gcgcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaact 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gcgcccgccgagtctagtggtcctaaacatttcacaattgcgctacagaactgttgaact 39
Query: 61 gttaagaaccactggacccagcgcgc 86
||||||||||||||||||||||||||
Sbjct: 38 gttaagaaccactggacccagcgcgc 13
>26763_cfa-mir-203:mirbase
Length = 94
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 3 gcccgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgt 62
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gcccgccggggctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgt 29
Query: 63 taagaaccactggacccagcgcgc 86
||||||||||||||||||||||||
Sbjct: 28 taagaaccactggacccagcgcgc 5
>32793_rno-mir-203:mirbase
Length = 97
Score = 145 bits (73), Expect = 6e-36
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 6 cgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 cgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaa 22
Query: 66 gaaccactggacc 78
|||||||||||||
Sbjct: 21 gaaccactggacc 9
>33031_rno-mir-3545:mirbase
Length = 115
Score = 145 bits (73), Expect = 6e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 6 cgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 cgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaa 80
Query: 66 gaaccactggacc 78
|||||||||||||
Sbjct: 81 gaaccactggacc 93
>33032_rno-mir-3545:mirbase
Length = 115
Score = 145 bits (73), Expect = 6e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 6 cgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 cgccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaa 80
Query: 66 gaaccactggacc 78
|||||||||||||
Sbjct: 81 gaaccactggacc 93
>31929_mmu-mir-203:mirbase
Length = 76
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 7 gccgggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaag 66
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 76 gccgggtctagtggtcctaaacatttcacaattgtgctacagaactgttgaactgtcaag 17
Query: 67 aaccactggacc 78
||||||||||||
Sbjct: 16 aaccactggacc 5
>26502_tgu-mir-203:mirbase
Length = 132
Score = 95.6 bits (48), Expect = 5e-21
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 11 ggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaagaacc 70
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 125 ggtcaagtggtcctaaacatttcacaattatgctagagaactgttgaactgttaagaacc 66
Query: 71 actg 74
||||
Sbjct: 65 actg 62
>25824_xtr-mir-203:mirbase
Length = 74
Score = 91.7 bits (46), Expect = 8e-20
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 16 agtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaagaaccact 73
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 66 agtggtcctaaacatttcacaatttcgatagagaactgttgaactgttaagaaccact 9
>25994_gga-mir-203:mirbase
Length = 98
Score = 87.7 bits (44), Expect = 1e-18
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 11 ggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaagaacc 70
|||| |||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 80 ggtcaagtggtcctaaacatttcacaattatgatagagaactgttgaactgttaagaacc 21
Query: 71 actg 74
||||
Sbjct: 20 actg 17
>27421_mdo-mir-203:mirbase
Length = 81
Score = 85.7 bits (43), Expect = 5e-18
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 16 agtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaagaaccactgg 75
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 72 agtggtcctaaacatttcacaatctctacacagaactgttgaactgttaagaaccactgg 13
Query: 76 acc 78
|||
Sbjct: 12 acc 10
>34359_dre-mir-203a:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 3e-16
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 11 ggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaagaacc 70
|||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 94 ggtcaagtggtcctaaacatttcacaattttgagatagaactgttgaactgttaagaacc 35
Query: 71 actg 74
||||
Sbjct: 34 actg 31
>25520_pma-mir-203a:mirbase
Length = 91
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 16 agtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaagaaccactgg 75
|||||||||||||||||||||||| | | | ||||||||||||||| | |||||||||||
Sbjct: 74 agtggtcctaaacatttcacaatttctccaaagaactgttgaactgatgagaaccactgg 15
>25521_pma-mir-203b:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 16 agtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaagaaccactg 74
|||||||||||||||||||||||| | || ||||||||||||||| | ||||||||||
Sbjct: 74 agtggtcctaaacatttcacaatttcagtagagaactgttgaactggttagaaccactg 16
>34631_fru-mir-203:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 7e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 11 ggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaagaacc 70
|||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct: 70 ggtcaagtggtcctaaacatttcacaattttctcatagaactgttgaactgttgagaacc 11
Query: 71 act 73
|||
Sbjct: 10 act 8
>34778_tni-mir-203:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 7e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 11 ggtctagtggtcctaaacatttcacaattgcgctacagaactgttgaactgttaagaacc 70
|||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct: 70 ggtcaagtggtcctaaacatttcacaattttctcaaagaactgttgaactgttgagaacc 11
Query: 71 act 73
|||
Sbjct: 10 act 8
>34360_dre-mir-203b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 47 agaactgttgaactgttaagaaccact 73
||||||||||||||||| |||||||||
Sbjct: 40 agaactgttgaactgttgagaaccact 14
