miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ttgcctttgtctgcatttgcacctgcacctt 31
|||||||| ||||||||||||||||||||||
Sbjct: 10 ttgcctttatctgcatttgcacctgcacctt 40
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ttgcctttgtctgcatttgcacctgcacctt 31
|||||||| ||||||||||||||||||||||
Sbjct: 10 ttgcctttatctgcatttgcacctgcacctt 40
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 gcctttgtctgcatttgcacctgcacctt 31
|||||| ||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgcacctt 40
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 cctttgtctgcatttgcacctgcacctt 31
||||| ||||||||||||||||||||||
Sbjct: 13 cctttatctgcatttgcacctgcacctt 40
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 ttgcctttgtctgcatttgcacctgcaccttt 32
|||||||| |||||||||||||||||| ||||
Sbjct: 10 ttgcctttatctgcatttgcacctgcatcttt 41
>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
Length = 175
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tctgcatttgcacctgcaccttt 32
|||||||||||||||||||||||
Sbjct: 15 tctgcatttgcacctgcaccttt 37
