miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 9 tggtctgagagattgaagctgccagcatgatctggt 44
|||| |||||||||||||||||||||||||||||||
Sbjct: 1 tggtttgagagattgaagctgccagcatgatctggt 36
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 248 caggtcatcttgcagcttcaatcactca 275
||||||||||||||||||||||| ||||
Sbjct: 312 caggtcatcttgcagcttcaatccctca 339
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 248 caggtcatcttgcagcttcaatcactcat 276
|||||||||||||||||||||||||||||
Sbjct: 404 caggtcatcttgcagcttcaatcactcat 432
Score = 56.0 bits (28), Expect = 3e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 9 tggtctgagagattgaagctgccagcatgatctggt 44
|||| |||||| ||||||||||||||||||||||||
Sbjct: 1 tggtttgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 58.0 bits (29), Expect = 7e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 9 tggtctgagagattgaagctgccagcatgatctggtg 45
|||| |||||| |||||||||||||||||||||||||
Sbjct: 1 tggtttgagaggttgaagctgccagcatgatctggtg 37
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 248 caggtcatcttgcagcttcaatcactca 275
||||||||||||||||||||||||||||
Sbjct: 323 caggtcatcttgcagcttcaatcactca 350
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 58.0 bits (29), Expect = 7e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 9 tggtctgagagattgaagctgccagcatgatctggtg 45
|||| |||||| |||||||||||||||||||||||||
Sbjct: 1 tggtgtgagaggttgaagctgccagcatgatctggtg 37
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 56.0 bits (28), Expect = 3e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 9 tggtctgagagattgaagctgccagcatgatctggt 44
|||| |||||| ||||||||||||||||||||||||
Sbjct: 1 tggtttgagaggttgaagctgccagcatgatctggt 36
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 248 caggtcatcttgcagcttcaatcactca 275
||||||||||||||||||||||||||||
Sbjct: 405 caggtcatcttgcagcttcaatcactca 432
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 248 caggtcatcttgcagcttcaatcactca 275
||||||||||||||||||||||||||||
Sbjct: 123 caggtcatcttgcagcttcaatcactca 150
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 14 tgagagattgaagctgccagcatgatctggt 44
|||||| ||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 56.0 bits (28), Expect = 3e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 9 tggtctgagagattgaagctgccagcatgatctggt 44
|||| ||||||| |||||||||||||||||||||||
Sbjct: 1 tggtgtgagagaatgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 tggtctgagagattgaagctgccagcatgatctgg 43
|||| |||||| |||||||||||||||||||||||
Sbjct: 1 tggtgtgagagcttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 52.0 bits (26), Expect = 4e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tggtctgagagattgaagctgccagcatgatctg 42
|||| |||||| ||||||||||||||||||||||
Sbjct: 1 tggtgtgagaggttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 48.1 bits (24), Expect = 7e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 9 tggtctgagagattgaagctgccagcatgatctggt 44
|||| |||||| |||||||||||||||||||||||
Sbjct: 1 tggtgtgagaggctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctggt 44
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctggt 44
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctggt 44
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttgaagctgccagcatgatctgg 43
|||||||||||||||||||||||
Sbjct: 13 ttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctggt 44
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctggt 44
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
