miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;AADA01252628.1/3222-2940 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 56.0 bits (28), Expect = 4e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||||||||||||||||| |||||
Sbjct: 223 agtgagccgagatcgtaccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;AADC01050253.1/3525-3807 9606:Homo sapiens
(human)
Length = 283
Score = 56.0 bits (28), Expect = 4e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||||||||||||||||| |||||
Sbjct: 223 agtgagctgagatcgtaccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;AP002956.1/198255-197967 9606:Homo sapiens
(human)
Length = 289
Score = 54.0 bits (27), Expect = 1e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 gagatcgtaccactgcactccaacctggtga 49
|||||||||||||||||||||| ||||||||
Sbjct: 96 gagatcgtaccactgcactccagcctggtga 126
>RF00017;Metazoa_SRP;AADC01003362.1/5618-5894 9606:Homo sapiens
(human)
Length = 277
Score = 54.0 bits (27), Expect = 1e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 4 aggctggagtgagcggagatcgtaccactgcactccaacctgg 46
|||||| ||||||| |||||| ||||||||||||||| |||||
Sbjct: 80 aggctgcagtgagctgagatcataccactgcactccagcctgg 122
>RF00017;Metazoa_SRP;ABSL01063108.1/19801-20087 9606:Homo sapiens
(human)
Length = 287
Score = 54.0 bits (27), Expect = 1e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 gagatcgtaccactgcactccaacctggtga 49
|||||||||||||||||||||| ||||||||
Sbjct: 96 gagatcgtaccactgcactccagcctggtga 126
>RF00017;Metazoa_SRP;AACZ02008236.1/6095-6390 9598:Pan troglodytes
(chimpanzee)
Length = 296
Score = 50.1 bits (25), Expect = 2e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 2 tgaggctggagtgagcggagatcgtaccactgcactccaacctgg 46
||||| || ||||||| |||||||| ||||||||||||| |||||
Sbjct: 79 tgaggttgcagtgagctgagatcgtgccactgcactccagcctgg 123
>RF00017;Metazoa_SRP;ABGA01026025.1/1-283 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||| ||||||||||||| |||||
Sbjct: 223 agtgagccgagatcgtgccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;ABGA01085038.1/2434-2153 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||||| |||||||||||||| |||||
Sbjct: 222 agtgagccgagatcgcaccactgcactccagcctgg 257
>RF00017;Metazoa_SRP;ABGA01291646.1/18820-19110 9601:Pongo abelii
(Sumatran orangutan)
Length = 291
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||||||||||||||||||| |||||
Sbjct: 231 agtgagccaagatcgtaccactgcactccagcctgg 266
>RF00017;Metazoa_SRP;ABGA01158646.1/1415-1133 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||| ||||||||||||| |||||
Sbjct: 223 agtgagctgagatcgtgccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;ABGA01146174.1/1083-800 9601:Pongo abelii
(Sumatran orangutan)
Length = 284
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||||| |||||||||||||| |||||
Sbjct: 224 agtgagctgagatcgcaccactgcactccagcctgg 259
>RF00017;Metazoa_SRP;ABGA01015944.1/10578-10296 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||| ||||||||||||| |||||
Sbjct: 223 agtgagccgagatcgtgccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;AADA01030606.1/10662-10361 9598:Pan troglodytes
(chimpanzee)
Length = 302
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||||| |||||||||||||| |||||
Sbjct: 222 agtgagccgagatcgcaccactgcactccatcctgg 257
>RF00017;Metazoa_SRP;AADA01272315.1/26073-26351 9598:Pan troglodytes
(chimpanzee)
Length = 279
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||| ||||||||||||| |||||
Sbjct: 219 agtgagcagagatcgtgccactgcactccagcctgg 254
>RF00017;Metazoa_SRP;AACZ02150364.1/46624-46905 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||||| |||||||||||||| |||||
Sbjct: 222 agtgagccgagatcgcaccactgcactccagcctgg 257
>RF00017;Metazoa_SRP;AACZ02094252.1/1604-1885 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||| ||||||||||||||||||||
Sbjct: 222 agtgagctaagatcgcaccactgcactccaacctgg 257
>RF00017;Metazoa_SRP;AADA01002908.1/3722-3440 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||||| |||||||||||||| |||||
Sbjct: 223 agtgagccgagatcgcaccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;AACZ02114187.1/25615-25895 9598:Pan troglodytes
(chimpanzee)
Length = 281
Score = 48.1 bits (24), Expect = 9e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 3 gaggctggagtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||||| ||||| | |||||||||||||| |||||
Sbjct: 215 gaggctgcagtgagctgagattgcaccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;AADB02035138.1/25911-26193 9606:Homo sapiens
(human)
Length = 283
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||||| |||||||||||||| |||||
Sbjct: 223 agtgagctgagatcgcaccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;AADD01116191.1/9008-9290 9606:Homo sapiens
(human)
Length = 283
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||| || |||||||||||||||||||
Sbjct: 88 agtgagctgagatggtgccactgcactccaacctgg 123
>RF00017;Metazoa_SRP;AADC01087178.1/2360-2079 9606:Homo sapiens
(human)
Length = 282
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| ||||||| |||||||||||||| |||||
Sbjct: 222 agtgagccgagatcgcaccactgcactccagcctgg 257
>RF00017;Metazoa_SRP;ABSL01071688.1/6738-7020 9606:Homo sapiens
(human)
Length = 283
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||| ||||||||||||| |||||
Sbjct: 223 agtgagctgagatcgtgccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;AANU01272978.1/4107-3825 9544:Macaca mulatta
(rhesus monkey)
Length = 283
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||||||| ||||||||| |||||
Sbjct: 88 agtgagctgagatcgtaccattgcactccagcctgg 123
>RF00017;Metazoa_SRP;AANU01248061.1/85213-84931 9544:Macaca mulatta
(rhesus monkey)
Length = 283
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||| ||||||||||||| |||||
Sbjct: 223 agtgagctgagatcgtgccactgcactccagcctgg 258
>RF00017;Metazoa_SRP;AANU01253812.1/35434-35700 9544:Macaca mulatta
(rhesus monkey)
Length = 267
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||| ||||||||||||| |||||
Sbjct: 88 agtgagccgagatcgtgccactgcactccagcctgg 123
>RF00017;Metazoa_SRP;AC191812.4/125814-126081 9544:Macaca mulatta
(rhesus monkey)
Length = 268
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||| ||||||||||||| |||||
Sbjct: 88 agtgagccgagatcgtgccactgcactccagcctgg 123
>RF00100;7SK;AADA01241262.1/1621-1382 9598:Pan troglodytes
(chimpanzee)
Length = 240
Score = 48.1 bits (24), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctgg 46
||||||| |||||||| ||||||||||||| |||||
Sbjct: 13 agtgagccgagatcgtgccactgcactccagcctgg 48
>RF00017;Metazoa_SRP;ABGA01120352.1/1652-1932 9601:Pongo abelii
(Sumatran orangutan)
Length = 281
Score = 46.1 bits (23), Expect = 3e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctg 45
||||||| |||||||| ||||||||||||| ||||
Sbjct: 223 agtgagccgagatcgtgccactgcactccagcctg 257
>RF00017;Metazoa_SRP;AADA01131324.1/1735-1380 9598:Pan troglodytes
(chimpanzee)
Length = 356
Score = 46.1 bits (23), Expect = 3e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctg 45
||||||| ||||||| |||||||||||||| ||||
Sbjct: 88 agtgagctgagatcgcaccactgcactccagcctg 122
>RF00017;Metazoa_SRP;AACZ02128731.1/12277-11995 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 46.1 bits (23), Expect = 3e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 gagatcgtaccactgcactccaacctggtga 49
|||||||| ||||||||||||| ||||||||
Sbjct: 96 gagatcgtgccactgcactccagcctggtga 126
>RF00017;Metazoa_SRP;ABSL01022297.1/5514-5788 9606:Homo sapiens
(human)
Length = 275
Score = 46.1 bits (23), Expect = 3e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctggtga 49
||||||| |||||| | ||||||||||||| ||||||||
Sbjct: 88 agtgagccgagatcctgccactgcactccagcctggtga 126
>RF00017;Metazoa_SRP;AADD01097468.1/8694-8976 9606:Homo sapiens
(human)
Length = 283
Score = 46.1 bits (23), Expect = 3e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctg 45
||||||| ||||||| |||||||||||||| ||||
Sbjct: 223 agtgagctgagatcgcaccactgcactccagcctg 257
>RF00017;Metazoa_SRP;AC023043.8/9773-9490 9606:Homo sapiens (human)
Length = 284
Score = 46.1 bits (23), Expect = 3e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactccaacctg 45
||||||| |||||||| ||||||||||||| ||||
Sbjct: 224 agtgagccgagatcgtgccactgcactccagcctg 258
>RF00017;Metazoa_SRP;ABGA01228981.1/2904-2602 9601:Pongo abelii
(Sumatran orangutan)
Length = 303
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactcca 40
||||||| ||||||| ||||||||||||||
Sbjct: 223 agtgagctgagatcgcaccactgcactcca 252
>RF00017;Metazoa_SRP;AADA01205371.1/5627-5975 9598:Pan troglodytes
(chimpanzee)
Length = 349
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactcca 40
||||||| ||||||||||||||| ||||||
Sbjct: 88 agtgagccgagatcgtaccactgtactcca 117
>RF00017;Metazoa_SRP;AACZ02187113.1/18594-18942 9598:Pan troglodytes
(chimpanzee)
Length = 349
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactcca 40
||||||| ||||||||||||||| ||||||
Sbjct: 88 agtgagccgagatcgtaccactgtactcca 117
>RF00017;Metazoa_SRP;ABSL01045524.1/410-121 9606:Homo sapiens
(human)
Length = 290
Score = 44.1 bits (22), Expect = 1e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 5 ggctggagtgagcggagatcgtaccactgcactccaacctgg 46
||||| ||||||| ||||| ||||||||||||||| |||||
Sbjct: 82 ggctgcagtgagccaagatcataccactgcactccagcctgg 123
>RF00017;Metazoa_SRP;AADD01150616.1/16450-16738 9606:Homo sapiens
(human)
Length = 289
Score = 44.1 bits (22), Expect = 1e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 5 ggctggagtgagcggagatcgtaccactgcactccaacctgg 46
||||| ||||||| ||||| ||||||||||||||| |||||
Sbjct: 82 ggctgcagtgagccaagatcataccactgcactccagcctgg 123
>RF00017;Metazoa_SRP;AANU01267855.1/1623-1923 9544:Macaca mulatta
(rhesus monkey)
Length = 301
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 agtgagcggagatcgtaccactgcactcca 40
||||||| |||||||||||| |||||||||
Sbjct: 222 agtgagccgagatcgtaccattgcactcca 251
>RF00100;7SK;AACZ02144640.1/16778-17121 9598:Pan troglodytes
(chimpanzee)
Length = 344
Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 agtgagcggagatcgtaccactgcactcca 40
||||||| |||||||||||| |||||||||
Sbjct: 308 agtgagctgagatcgtaccattgcactcca 279
>RF00017;Metazoa_SRP;AADA01084600.1/2717-3000 9598:Pan troglodytes
(chimpanzee)
Length = 284
Score = 42.1 bits (21), Expect = 5e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 14 gagcggagatcgtaccactgcactccaacctgg 46
|||| ||||||| |||||||||||||| |||||
Sbjct: 227 gagctgagatcgcaccactgcactccagcctgg 259
>RF00017;Metazoa_SRP;AADC01047521.1/166550-166837 9606:Homo sapiens
(human)
Length = 288
Score = 42.1 bits (21), Expect = 5e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 10 gagtgagcggagatcgtaccactgcactccaacctgg 46
|||||||| |||||| | ||||||||||||| |||||
Sbjct: 227 gagtgagccgagatcatgccactgcactccagcctgg 263
>RF00017;Metazoa_SRP;AANU01172980.1/26475-26204 9544:Macaca mulatta
(rhesus monkey)
Length = 272
Score = 42.1 bits (21), Expect = 5e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 14 gagcggagatcgtaccactgcactccaacctgg 46
|||| ||||| |||||||||||||||| |||||
Sbjct: 85 gagccgagattgtaccactgcactccagcctgg 117
