miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;AADB02008084.1/44190-43904 9606:Homo sapiens
(human)
Length = 287
Score = 58.0 bits (29), Expect = 1e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||||||||||||||| ||||||||||| |||||
Sbjct: 287 ttgagacagagtcttgctctgtcgcccaggctggagt 251
>RF00017;Metazoa_SRP;AADC01009840.1/7346-7628 9606:Homo sapiens
(human)
Length = 283
Score = 58.0 bits (29), Expect = 1e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||||||||||||||| ||||||||||| |||||
Sbjct: 283 ttgagacagagtcttgctctgtcgcccaggctggagt 247
>RF00017;Metazoa_SRP;AACZ02130640.1/1563-1266 9598:Pan troglodytes
(chimpanzee)
Length = 298
Score = 56.0 bits (28), Expect = 5e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggag 66
||||||||||||||||||| ||||||||||| ||||
Sbjct: 281 ttgagacagagtcttgctctgtcgcccaggctggag 246
>RF00017;Metazoa_SRP;AL117344.12/53999-53717 9606:Homo sapiens
(human)
Length = 283
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggc 61
||||||||||||||||||| |||||||||||
Sbjct: 283 ttgagacagagtcttgctctgtcgcccaggc 253
>RF00017;Metazoa_SRP;AACZ02021234.1/28696-28417 9598:Pan troglodytes
(chimpanzee)
Length = 280
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
||||| |||||||||| ||||||||||| || |||||||| |||||
Sbjct: 157 tttttttttttgagacggagtcttgctctgttgcccaggctggagt 112
>RF00017;Metazoa_SRP;ABSL01045524.1/410-121 9606:Homo sapiens
(human)
Length = 290
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
||||| ||||||||||||||| |||||| ||| ||||||| |||||
Sbjct: 157 tttttttttttgagacagagtattgctctgtcacccaggctggagt 112
>RF00017;Metazoa_SRP;AADC01110475.1/66623-66983 9606:Homo sapiens
(human)
Length = 361
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
||||| |||||||||| |||||| |||| ||||||||||| |||||
Sbjct: 154 tttttttttttgagacggagtctcgctctgtcgcccaggctggagt 109
>RF00017;Metazoa_SRP;ABBA01005081.1/46261-46548 9606:Homo sapiens
(human)
Length = 288
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
||||| |||||||||| ||||||||||| || |||||||| |||||
Sbjct: 160 tttttttttttgagacggagtcttgctctgttgcccaggctggagt 115
>RF00017;Metazoa_SRP;AADD01150616.1/16450-16738 9606:Homo sapiens
(human)
Length = 289
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
||||| ||||||||||||||| |||||| ||| ||||||| |||||
Sbjct: 157 tttttttttttgagacagagtattgctctgtcacccaggctggagt 112
>RF00554;SNORA48;AANU01228109.1/31707-31548 9544:Macaca mulatta
(rhesus monkey)
Length = 160
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
||||| ||||| ||||||||||| |||| ||||||||||| |||||
Sbjct: 47 ttttttttttttagacagagtctggctctgtcgcccaggctggagt 2
>RF00017;Metazoa_SRP;ABGA01255151.1/8211-7930 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| ||||||||||| ||||||||||| |||||
Sbjct: 282 ttgagacggagtcttgctctgtcgcccaggctggagt 246
>RF00017;Metazoa_SRP;ABGA01067256.1/4913-4635 9601:Pongo abelii
(Sumatran orangutan)
Length = 279
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||||||||||| |||| ||||||||||| |||||
Sbjct: 279 ttgagacagagtctcgctctgtcgcccaggctggagt 243
>RF00017;Metazoa_SRP;ABGA01391766.1/7562-7278 9601:Pongo abelii
(Sumatran orangutan)
Length = 285
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| ||||||||||| ||||||||||| |||||
Sbjct: 285 ttgagacggagtcttgctctgtcgcccaggctggagt 249
>RF00017;Metazoa_SRP;AACZ02153889.1/8080-7794 9598:Pan troglodytes
(chimpanzee)
Length = 287
Score = 50.1 bits (25), Expect = 3e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 23 ttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
|||| |||||||||| |||||| |||| ||||||||||| |||||
Sbjct: 156 ttttatttttgagacggagtctcgctctgtcgcccaggctggagt 112
>RF00017;Metazoa_SRP;AADB02018502.1/111428-111708 9606:Homo sapiens
(human)
Length = 281
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| ||||||||||| ||||||||||| |||||
Sbjct: 281 ttgagacggagtcttgctctgtcgcccaggctggagt 245
>RF00017;Metazoa_SRP;AK057594.1/1557-1837 9606:Homo sapiens (human)
Length = 281
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| ||||||||||| ||||||||||| |||||
Sbjct: 281 ttgagacggagtcttgctctgtcgcccaggctggagt 245
>RF00017;Metazoa_SRP;AADB02013937.1/195-495 9606:Homo sapiens
(human)
Length = 301
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| |||||| |||||||||||||||| |||||
Sbjct: 301 ttgagacggagtctcgctccgtcgcccaggctggagt 265
>RF00017;Metazoa_SRP;AADB02009732.1/81584-81866 9606:Homo sapiens
(human)
Length = 283
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||||||||||||||| || |||||||| |||||
Sbjct: 283 ttgagacagagtcttgctctgttgcccaggctggagt 247
>RF00017;Metazoa_SRP;ABBA01020160.1/24340-24621 9606:Homo sapiens
(human)
Length = 282
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||||||||||||||| ||| ||||||| |||||
Sbjct: 282 ttgagacagagtcttgctctgtcacccaggctggagt 246
>RF00017;Metazoa_SRP;AANU01212875.1/19509-19790 9544:Macaca mulatta
(rhesus monkey)
Length = 282
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||||||||||||||| ||| ||||||| |||||
Sbjct: 282 ttgagacagagtcttgctctgtcacccaggctggagt 246
>RF00100;7SK;CABD01566760.1/850-1179 9595:Gorilla gorilla gorilla
(Western lowland gorilla)
Length = 330
Score = 50.1 bits (25), Expect = 3e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggag 66
||||| ||||||||||||||||||||| || |||||||| ||||
Sbjct: 260 tttttttttttgagacagagtcttgctgtgttgcccaggctggag 304
>RF00026;U6;ABBA01031862.1/10800-10940 9606:Homo sapiens (human)
Length = 141
Score = 50.1 bits (25), Expect = 3e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 23 ttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
|||| |||||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 57 ttttttttttgagacggagtcctgctctgtcgcccaggctggagt 13
>RF00017;Metazoa_SRP;AACZ02123884.1/7542-7262 9598:Pan troglodytes
(chimpanzee)
Length = 281
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggag 66
||||||||||||||||||| || |||||||| ||||
Sbjct: 281 ttgagacagagtcttgctctgttgcccaggctggag 246
>RF00017;Metazoa_SRP;AANU01105175.1/9945-9665 9544:Macaca mulatta
(rhesus monkey)
Length = 281
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 32 tgagacagagtcttgctccgtcgcccaggccggagt 67
|||| ||||||||||||| ||||||||||| |||||
Sbjct: 280 tgaggcagagtcttgctctgtcgcccaggctggagt 245
>RF00017;Metazoa_SRP;ABDC01524278.1/508-207 30608:Microcebus murinus
(gray mouse lemur)
Length = 302
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 33 gagacagagtcttgctccgtcgcccaggccggagt 67
||||||||||||||||| || |||||||| |||||
Sbjct: 300 gagacagagtcttgctctgttgcccaggctggagt 266
>RF00017;Metazoa_SRP;ABDC01028452.1/1888-1590 30608:Microcebus
murinus (gray mouse lemur)
Length = 299
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgct 48
||||| |||||||||||||||||||||
Sbjct: 161 tttttttttttgagacagagtcttgct 135
>RF00017;Metazoa_SRP;ABDC01398661.1/4360-4648 30608:Microcebus
murinus (gray mouse lemur)
Length = 289
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtct 44
|||||||||||||||||||||||
Sbjct: 161 tttttgtttttgagacagagtct 139
>RF00017;Metazoa_SRP;ABGA01095204.1/17559-17841 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggc 61
||||||||||||||||||| ||| |||||||
Sbjct: 283 ttgagacagagtcttgctctgtcacccaggc 253
>RF00017;Metazoa_SRP;ABGA01295388.1/2260-2541 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggc 61
||||||| ||||||||||| |||||||||||
Sbjct: 282 ttgagacggagtcttgctctgtcgcccaggc 252
>RF00017;Metazoa_SRP;AADA01339504.1/248-529 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggc 61
||||||| ||||||||||| |||||||||||
Sbjct: 282 ttgagacggagtcttgctctgtcgcccaggc 252
>RF00017;Metazoa_SRP;AACZ02147783.1/20859-20578 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggc 61
||||||||||||||||||| || ||||||||
Sbjct: 282 ttgagacagagtcttgctctgttgcccaggc 252
>RF00017;Metazoa_SRP;AADA01002908.1/3722-3440 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 33 gagacagagtcttgctccgtcgcccaggccggagt 67
|||||| |||||||||| ||||||||||| |||||
Sbjct: 281 gagacacagtcttgctctgtcgcccaggctggagt 247
>RF00017;Metazoa_SRP;CABD01052359.1/621-902 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 282
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggc 61
||||||||||||||||||| || ||||||||
Sbjct: 282 ttgagacagagtcttgctctgttgcccaggc 252
>RF00019;Y_RNA;AAQR01169434.1/854-700 30611:Otolemur garnettii
(small-eared galago)
Length = 155
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 ttgtttttgtttttgagacagag 41
|||||||||||||||||||||||
Sbjct: 76 ttgtttttgtttttgagacagag 54
>RF00004;U2;ABSL01059125.1/5621-5763 9606:Homo sapiens (human)
Length = 143
Score = 46.1 bits (23), Expect = 5e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 29 ttttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||||||||||||| |||| || |||||||| |||||
Sbjct: 72 ttttgagacagagtctcgctctgttgcccaggctggagt 110
>RF00017;Metazoa_SRP;ABGA01297371.1/1800-1539 9601:Pongo abelii
(Sumatran orangutan)
Length = 262
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
||||| ||||| |||| ||||||||||| |||| |||||| |||||
Sbjct: 157 ttttttttttttagacggagtcttgctctgtcgtccaggctggagt 112
>RF00017;Metazoa_SRP;AADA01313803.1/16287-15985 9598:Pan troglodytes
(chimpanzee)
Length = 303
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccag 59
||||| ||||||||| |||||||||||||| ||||||
Sbjct: 292 tttttttttttgagatggagtcttgctccgttgcccag 255
>RF00017;Metazoa_SRP;AACZ02132279.1/8599-8317 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 34 agacagagtcttgctccgtcgcccaggccggagt 67
||||||||||| |||| ||||||||||| |||||
Sbjct: 280 agacagagtctcgctctgtcgcccaggctggagt 247
>RF00017;Metazoa_SRP;ABBA01023443.1/8460-8729 9606:Homo sapiens
(human)
Length = 270
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
||||| ||||||||| |||||| |||| ||||||||||| |||||
Sbjct: 157 tttttttttttgagatggagtctcgctctgtcgcccaggctggagt 112
>RF00017;Metazoa_SRP;AANU01194555.1/9029-8746 9544:Macaca mulatta
(rhesus monkey)
Length = 284
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 34 agacagagtcttgctccgtcgcccaggccggagt 67
|||| ||||||||||| ||||||||||| |||||
Sbjct: 281 agacggagtcttgctctgtcgcccaggctggagt 248
>RF00001;5S_rRNA;AADA01147158.1/66-195 9598:Pan troglodytes
(chimpanzee)
Length = 130
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 tttttgtttttgagacagagtcttgctccgtcgcccaggccggagt 67
||||| |||||||||| |||||| | || ||||||||||| |||||
Sbjct: 48 tttttttttttgagacggagtctcgttctgtcgcccaggctggagt 3
>RF00017;Metazoa_SRP;ABDC01210144.1/30937-30658 30608:Microcebus
murinus (gray mouse lemur)
Length = 280
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||||||||||||||| || |||||||| |||||
Sbjct: 280 ttgagacagagtcttgctatgttgcccaggctggagt 244
>RF00017;Metazoa_SRP;ABGA01173288.1/9866-10150 9601:Pongo abelii
(Sumatran orangutan)
Length = 285
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||||||||||| |||| || |||||||| |||||
Sbjct: 285 ttgagacagagtctcgctctgttgcccaggctggagt 249
>RF00017;Metazoa_SRP;ABGA01209199.1/33151-32869 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| ||||||||||| || |||||||| |||||
Sbjct: 283 ttgagacggagtcttgctctgttgcccaggctggagt 247
>RF00017;Metazoa_SRP;ABGA01172272.1/9412-9694 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||| |||||||||||| ||| ||||||| |||||
Sbjct: 283 ttgagagagagtcttgctctgtcacccaggctggagt 247
>RF00017;Metazoa_SRP;ABGA01265337.1/4413-4694 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||||||||||||||| ||| || |||| |||||
Sbjct: 282 ttgagacagagtcttgctctgtcacctaggctggagt 246
>RF00017;Metazoa_SRP;ABGA01177534.1/7970-7688 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||| |||||||||||| ||| ||||||| |||||
Sbjct: 283 ttgagatagagtcttgctctgtcacccaggctggagt 247
>RF00017;Metazoa_SRP;ABGA01033679.1/8172-7892 9601:Pongo abelii
(Sumatran orangutan)
Length = 281
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 39 gagtcttgctccgtcgcccaggccggagt 67
||||||||||| ||||||||||| |||||
Sbjct: 275 gagtcttgctctgtcgcccaggctggagt 247
>RF00017;Metazoa_SRP;AADA01079623.1/10445-10731 9598:Pan troglodytes
(chimpanzee)
Length = 287
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| ||||||||||| ||||||| ||| |||||
Sbjct: 287 ttgagacggagtcttgctctgtcgcccgggctggagt 251
>RF00017;Metazoa_SRP;AADA01187409.1/9085-8803 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||| |||||||||||| ||| ||||||| |||||
Sbjct: 283 ttgagagagagtcttgctctgtcacccaggctggagt 247
>RF00017;Metazoa_SRP;AACZ02008236.1/6095-6390 9598:Pan troglodytes
(chimpanzee)
Length = 296
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 28 tttttgagacagagtcttgctccgtcgcc 56
|||||||||| ||||||||||| ||||||
Sbjct: 150 tttttgagacggagtcttgctctgtcgcc 122
>RF00017;Metazoa_SRP;AACZ02048701.1/9629-9344 9598:Pan troglodytes
(chimpanzee)
Length = 286
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||||||||||| ||| ||||||||||| |||||
Sbjct: 286 ttgagacagagtctcactctgtcgcccaggctggagt 250
>RF00017;Metazoa_SRP;AADA01008014.1/760-478 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||||||||||| ||| ||| ||||||| |||||
Sbjct: 283 ttgagacagagtcttactctgtcacccaggctggagt 247
>RF00017;Metazoa_SRP;AADD01159520.1/9861-9582 9606:Homo sapiens
(human)
Length = 280
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccag 59
||||||||||||||||||| || ||||||
Sbjct: 280 ttgagacagagtcttgctctgttgcccag 252
>RF00017;Metazoa_SRP;ABBA01048440.1/9037-9319 9606:Homo sapiens
(human)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||||||||||| |||| || |||||||| |||||
Sbjct: 283 ttgagacagagtctcgctctgttgcccaggctggagt 247
>RF00017;Metazoa_SRP;ABSL01057357.1/238468-238749 9606:Homo sapiens
(human)
Length = 282
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 39 gagtcttgctccgtcgcccaggccggagt 67
||||||||||| ||||||||||| |||||
Sbjct: 274 gagtcttgctctgtcgcccaggcaggagt 246
>RF00017;Metazoa_SRP;AL357500.17/74632-74351 9606:Homo sapiens
(human)
Length = 282
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||||||||||| |||| || |||||||| |||||
Sbjct: 282 ttgagacagagtctcgctctgttgcccaggctggagt 246
>RF00017;Metazoa_SRP;ABBA01034472.1/94407-94689 9606:Homo sapiens
(human)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| ||||||||||| ||| ||||||| |||||
Sbjct: 283 ttgagacggagtcttgctctgtcacccaggctggagt 247
>RF00017;Metazoa_SRP;ABBA01031768.1/44728-45012 9606:Homo sapiens
(human)
Length = 285
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| ||||||||||| ||| ||||||| |||||
Sbjct: 285 ttgagacggagtcttgctctgtcacccaggctggagt 249
>RF00017;Metazoa_SRP;AADD01174862.1/2022-2305 9606:Homo sapiens
(human)
Length = 284
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 39 gagtcttgctccgtcgcccaggccggagt 67
||||||||||| ||||||||||| |||||
Sbjct: 276 gagtcttgctctgtcgcccaggctggagt 248
>RF00017;Metazoa_SRP;ABBA01050605.1/325399-325117 9606:Homo sapiens
(human)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||||||||||| ||| ||||||||||| |||||
Sbjct: 283 ttgagacagagtctcgctttgtcgcccaggctggagt 247
>RF00017;Metazoa_SRP;AL022323.7/46269-46551 9606:Homo sapiens
(human)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 39 gagtcttgctccgtcgcccaggccggagt 67
||||||||||| ||||||||||| |||||
Sbjct: 275 gagtcttgctctgtcgcccaggctggagt 247
>RF00017;Metazoa_SRP;ABBA01010070.1/108367-108085 9606:Homo sapiens
(human)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||||| |||| |||| ||||||||||| |||||
Sbjct: 283 ttgagacagggtctcgctctgtcgcccaggctggagt 247
>RF00017;Metazoa_SRP;ABSL01071688.1/6738-7020 9606:Homo sapiens
(human)
Length = 283
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
|||||| |||||||||||| |||||||||| |||||
Sbjct: 283 ttgagatagagtcttgctctatcgcccaggctggagt 247
>RF00017;Metazoa_SRP;ABBA01028980.1/11771-11491 9606:Homo sapiens
(human)
Length = 281
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||||||||||||||| ||| || |||| |||||
Sbjct: 281 ttgagacagagtcttgctctgtcacctaggctggagt 245
>RF00017;Metazoa_SRP;AANU01253345.1/1265-1546 9544:Macaca mulatta
(rhesus monkey)
Length = 282
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 31 ttgagacagagtcttgctccgtcgcccaggccggagt 67
||||||| |||||| |||| ||||||||||| |||||
Sbjct: 282 ttgagacggagtctcgctctgtcgcccaggctggagt 246
>RF01233;snoU109;AAQR01295482.1/6-127 30611:Otolemur garnettii
(small-eared galago)
Length = 122
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 19 ttgtttttgtttttgagacag 39
|||||||||||||||||||||
Sbjct: 41 ttgtttttgtttttgagacag 21
