miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
          (barrel medic)
          Length = 137

 Score = 48.1 bits (24), Expect = 9e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 59 acatactccctccgtcccaaaatttaag 86
          ||||||||||||||||||||||| ||||
Sbjct: 2  acatactccctccgtcccaaaatgtaag 29




>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
           Indica Group
          Length = 122

 Score = 48.1 bits (24), Expect = 9e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 58  aacatactccctccgtcccaaaat 81
           ||||||||||||||||||||||||
Sbjct: 122 aacatactccctccgtcccaaaat 99




>RF00906;MIR1122;AP005421.3/127890-127779 39947:Oryza sativa
          Japonica Group
          Length = 112

 Score = 48.1 bits (24), Expect = 9e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 59 acatactccctccgtcccaaaatttaag 86
          ||||||||||||||||||||||| ||||
Sbjct: 2  acatactccctccgtcccaaaatataag 29




>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 acatactccctccgtcccaaaat 81
          |||||||||||||||||||||||
Sbjct: 2  acatactccctccgtcccaaaat 24




>RF00906;MIR1122;AAAA02022585.1/6052-5955 39946:Oryza sativa
          Indica Group
          Length = 98

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 58 aacatactccctccgtcccaaaa 80
          |||||||||||||||||||||||
Sbjct: 98 aacatactccctccgtcccaaaa 76




>RF00906;MIR1122;AAAA02004642.1/60119-60040 39946:Oryza sativa
          Indica Group
          Length = 80

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aacatactccctccgtcccaaaa 80
          |||||||||||||||||||||||
Sbjct: 1  aacatactccctccgtcccaaaa 23




>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
          Length = 125

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 61 atactccctccgtcccaaaatttaagt 87
          ||||||||||||||||||||| |||||
Sbjct: 4  atactccctccgtcccaaaatataagt 30




>RF00906;MIR1122;AC215820.3/114332-114188 4537:Oryza punctata
          Length = 145

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 60 catactccctccgtcccaaaatttaag 86
          |||||||||||||||||||||| ||||
Sbjct: 3  catactccctccgtcccaaaatataag 29




>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
          Japonica Group
          Length = 92

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 acatactccctccgtcccaaaat 81
          |||||||||||||||||||||||
Sbjct: 2  acatactccctccgtcccaaaat 24




>RF00906;MIR1122;AC210491.1/95749-95858 4538:Oryza glaberrima
           (African rice)
          Length = 110

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 61  atactccctccgtcccaaaatttaagt 87
           ||||||||||||||||||||| |||||
Sbjct: 107 atactccctccgtcccaaaatataagt 81




>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
          Japonica Group
          Length = 112

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 61 atactccctccgtcccaaaatttaagt 87
          ||||||||||||||||||||| |||||
Sbjct: 4  atactccctccgtcccaaaatataagt 30




>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
          Japonica Group
          Length = 103

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 acatactccctccgtcccaaaat 81
          |||||||||||||||||||||||
Sbjct: 2  acatactccctccgtcccaaaat 24




>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
          Japonica Group
          Length = 97

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 acatactccctccgtcccaaaat 81
          |||||||||||||||||||||||
Sbjct: 2  acatactccctccgtcccaaaat 24




>RF00906;MIR1122;AP008216.1/16113535-16113433 39947:Oryza sativa
          Japonica Group
          Length = 103

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 62 tactccctccgtcccaaaattta 84
          |||||||||||||||||||||||
Sbjct: 5  tactccctccgtcccaaaattta 27




>RF00906;MIR1122;AP008215.1/18970521-18970611 39947:Oryza sativa
          Japonica Group
          Length = 91

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 59 acatactccctccgtcccaaaat 81
          |||||||||||||||||||||||
Sbjct: 2  acatactccctccgtcccaaaat 24




>RF00906;MIR1122;AP003412.4/28754-28834 39947:Oryza sativa
          Japonica Group
          Length = 81

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aacatactccctccgtcccaaaa 80
          |||||||||||||||||||||||
Sbjct: 1  aacatactccctccgtcccaaaa 23