miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 149 bits (75), Expect = 6e-36
Identities = 82/83 (98%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 ggggtgaggtagtaggttgtgtggtttcaggg-cagtgatgttgcccctcagaagataac 59
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtgtggtttcaggggcagtgatgttgcccctcagaagataac 62
Query: 60 tatacaacctactgccttccctg 82
|||||||||||||||||||||||
Sbjct: 63 tatacaacctactgccttccctg 85
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 119 bits (60), Expect = 6e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 ggggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataact 60
||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||
Sbjct: 3 ggggtgaggtagtaggttgtgtggtttcagggcagcggtgtcgcccctcagcagataact 62
Query: 61 atacaacctactgccttccc 80
||||| ||||||||||||||
Sbjct: 63 atacagcctactgccttccc 82
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 113 bits (57), Expect = 3e-25
Identities = 75/80 (93%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 5 tgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc--tcagaagataactat 62
|||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 7 tgaggtagtaggttgtgtggtttcaggggagtgattttgccccaatcagaagataactat 66
Query: 63 acaacctactgccttccctg 82
||| ||||||||||||||||
Sbjct: 67 acagcctactgccttccctg 86
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 107 bits (54), Expect = 2e-23
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgccc-ctcagaagataact 60
||||||||||||||||||||||||||| ||| |||||| |||||| |||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcggggtagtgattttgcccgatcagaagataact 63
Query: 61 atacaacctactgccttccctg 82
||||||| ||||||||||||||
Sbjct: 64 atacaacatactgccttccctg 85
>RF00027;let-7;AAPY01023439.1/425-342 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 105 bits (53), Expect = 8e-23
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 ggggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataact 60
|||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct: 3 ggggtgaggtagtaggtt-tgtggtttcagggcagtgatgttgcccctcagcaaataact 61
Query: 61 atacaacctactgcctt 77
| |||||||||| ||||
Sbjct: 62 acacaacctacttcctt 78
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 103 bits (52), Expect = 3e-22
Identities = 73/79 (92%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 3 ggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc--tcagaagataact 60
|||||||||||||||||||||||||||||| ||| || ||||||| |||| ||||||||
Sbjct: 5 ggtgaggtagtaggttgtgtggtttcagggtagtcattttgccccaatcaggagataact 64
Query: 61 atacaacctactgccttcc 79
|||||||||||||||||||
Sbjct: 65 atacaacctactgccttcc 83
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 97.6 bits (49), Expect = 2e-20
Identities = 75/81 (92%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 4 gtgaggtagtaggttgtgtggtttcagggcagtgatgtt-gcccc-tcagaagataacta 61
||||||||||||||||||| ||||||||| |||||| || ||||| |||| |||||||||
Sbjct: 6 gtgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataacta 65
Query: 62 tacaacctactgccttccctg 82
|||||||||||||||||||||
Sbjct: 66 tacaacctactgccttccctg 86
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 2 gggtgaggtagtaggttgtgtggtttcagggcagtgatgttgcccc-tcagaagataact 60
||||||||||||||||||||||||||||||| ||||| || |||| | || || |||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcagggttgtgattttaccccataaggagctaact 63
Query: 61 atacaacctactgccttccctg 82
||||||||||||||||||||||
Sbjct: 64 atacaacctactgccttccctg 85
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 65.9 bits (33), Expect = 7e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 6 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 65
|||||||||||||| | |||| ||||||| ||| ||||||| || |||||||||||||
Sbjct: 8 gaggtagtaggttgcatagtttgagggcagggattttgccccaaaggagataactataca 67
Query: 66 acctactgccttccctg 82
|||| ||||||| ||||
Sbjct: 68 acctgctgcctttcctg 84
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 50 agaagataactatacaacctactgccttccctg 82
||||||||||||||||||||||| | |||||||
Sbjct: 56 agaagataactatacaacctactactttccctg 88
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 50 agaagataactatacaacctactgccttccctg 82
||||||||||||||||||||||| | |||||||
Sbjct: 56 agaagataactatacaacctactactttccctg 88
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 ctcagaagataactatacaacctactgccttcc 79
||||| ||||||||||||||| |||||||||||
Sbjct: 55 ctcaggagataactatacaacttactgccttcc 87
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 48 tcagaagataactatacaacctactgccttcc 79
|||| ||||||||||||||| |||||||||||
Sbjct: 53 tcaggagataactatacaacttactgccttcc 84
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 51 gaagataactatacaacctactgccttccctg 82
|||||||||||||||| ||| |||||||||||
Sbjct: 55 gaagataactatacaatctattgccttccctg 86
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 48 tcagaagataactatacaacctactgccttccctg 82
|||| |||||||||||||| ||| |||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctg 86
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 agataactatacaacctactgccttccctg 82
|||||||||||||| ||| |||||||||||
Sbjct: 58 agataactatacaatctattgccttccctg 87
