miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27634_mml-let-7d:mirbase
Length = 87
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 61
Query: 61 ctatacgacctgctgcctttcttagg 86
||||||||||||||||||||||||||
Sbjct: 62 ctatacgacctgctgcctttcttagg 87
>28344_hsa-let-7d:mirbase
Length = 87
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 61
Query: 61 ctatacgacctgctgcctttcttagg 86
||||||||||||||||||||||||||
Sbjct: 62 ctatacgacctgctgcctttcttagg 87
>30736_ppy-let-7d:mirbase
Length = 87
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 61
Query: 61 ctatacgacctgctgcctttcttagg 86
||||||||||||||||||||||||||
Sbjct: 62 ctatacgacctgctgcctttcttagg 87
>26932_eca-let-7d:mirbase
Length = 87
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagataa 61
Query: 61 ctatacgacctgctgcctttcttagg 86
||||||||||||||||||||||||||
Sbjct: 62 ctatacgacctgctgcctttcttagg 87
>33113_bta-let-7d:mirbase
Length = 87
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2 ctaggaagaggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggtaa 61
Query: 61 ctatacgacctgctgcctttcttagg 86
||||||||||||||||||||||||||
Sbjct: 62 ctatacgacctgctgcctttcttagg 87
>27322_mdo-let-7d:mirbase
Length = 106
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 10 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggagttaa 69
Query: 61 ctatacgacctgctgcctttcttagg 86
|||||| |||||||||||||||||||
Sbjct: 70 ctatacaacctgctgcctttcttagg 95
>31757_mmu-let-7d:mirbase
Length = 103
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 10 ctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaa 69
Query: 61 ctatacgacctgctgcctttcttagg 86
||||||||||||||||||||||||||
Sbjct: 70 ctatacgacctgctgcctttcttagg 95
>32643_rno-let-7d:mirbase
Length = 98
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 8 ctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaa 67
Query: 61 ctatacgacctgctgcctttcttagg 86
||||||||||||||||||||||||||
Sbjct: 68 ctatacgacctgctgcctttcttagg 93
>33099_rno-mir-3596b:mirbase
Length = 95
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Minus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 89 ctaggaagaggtagtaggttgcatagttttagggcagagattttgcccacaaggagttaa 30
Query: 61 ctatacgacctgctgcctttcttagg 86
||||||||||||||||||||||||||
Sbjct: 29 ctatacgacctgctgcctttcttagg 4
>25873_gga-let-7d:mirbase
Length = 103
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10 ctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaa 69
Query: 61 ctatacgacctgctgcctttcttagg 86
|||||| |||||||||||||||||||
Sbjct: 70 ctatacaacctgctgcctttcttagg 95
>26382_tgu-let-7d:mirbase
Length = 92
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 5 ctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggtaa 64
Query: 61 ctatacgacctgctgcctttcttagg 86
|||||| |||||||||||||||||||
Sbjct: 65 ctatacaacctgctgcctttcttagg 90
>31411_oan-let-7d:mirbase
Length = 116
Score = 123 bits (62), Expect = 2e-29
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 ctaggaagaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaa 60
||||||||||||||||||||||||||||||||||||| |||||||| || |||| | |||
Sbjct: 18 ctaggaagaggtagtaggttgcatagttttagggcagtgattttgctcataaggtgttaa 77
Query: 61 ctatacgacctgctgcctttcttagg 86
|||||| |||||||||||||||||||
Sbjct: 78 ctatacaacctgctgcctttcttagg 103
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttagggc 35
|||||||||||||| |||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttagggc 39
>25868_gga-let-7a-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 5 gaggtagtaggttgtatagttttaggg 31
>26377_tgu-let-7a-3:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 62 gaggtagtaggttgtatagttttaggg 88
>27318_mdo-let-7a-1:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 16 gaggtagtaggttgtatagttttaggg 42
>27629_mml-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>28339_hsa-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>30126_ptr-let-7a-1:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 6 gaggtagtaggttgtatagttttaggg 32
>30731_ppy-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>31752_mmu-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>32638_rno-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 14 gaggtagtaggttgtatagttttaggg 40
>33108_bta-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 7 gaggtagtaggttgtatagttttaggg 33
>33899_ssc-let-7a-2:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttaggg 38
>34165_dre-let-7a-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 12 gaggtagtaggttgtatagttttaggg 38
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 5 gaggtagtaggttgtatagttttaggg 31
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||||||||
Sbjct: 13 gaggtagtaggttgtatagttttaggg 39
>25871_gga-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 65/79 (82%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 3 aggaagaggtagtaggttgcatagttttagggcagggattttgccc--acaaggaggtaa 60
|||| |||||||||||||| | |||| |||| || |||||||||| | ||||| |||
Sbjct: 2 aggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataa 61
Query: 61 ctatacgacctgctgcctt 79
|||||| |||| |||||||
Sbjct: 62 ctatacaacctactgcctt 80
>26379_tgu-let-7b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 65/79 (82%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 3 aggaagaggtagtaggttgcatagttttagggcagggattttgccc--acaaggaggtaa 60
|||| |||||||||||||| | |||| |||| || |||||||||| | ||||| |||
Sbjct: 7 aggatgaggtagtaggttgtgtggtttcagggtagtgattttgccccaatcaggagataa 66
Query: 61 ctatacgacctgctgcctt 79
|||||| |||| |||||||
Sbjct: 67 ctatacaacctactgcctt 85
>27632_mml-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaactatacg 67
|||||||||||||| | |||| ||||||| ||| |||||| || || |||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 66
Query: 68 acctgctgcctt 79
|||| |||||||
Sbjct: 67 acctactgcctt 78
>30129_ptr-let-7b:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaactatacg 67
|||||||||||||| | |||| ||||||| ||| |||||| || || |||||||||
Sbjct: 6 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 65
Query: 68 acctgctgcctt 79
|||| |||||||
Sbjct: 66 acctactgcctt 77
>30734_ppy-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttagggcagggattttgcccacaaggaggtaactatacg 67
|||||||||||||| | |||| ||||||| ||| |||||| || || |||||||||
Sbjct: 7 gaggtagtaggttgtgtggtttcagggcagtgatgttgcccctcagaagataactataca 66
Query: 68 acctgctgcctt 79
|||| |||||||
Sbjct: 67 acctactgcctt 78
>25408_pma-let-7a-1:mirbase
Length = 108
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||| ||||
Sbjct: 17 gaggtagtaggttgtatagtttaaggg 43
>25409_pma-let-7a-2:mirbase
Length = 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||| ||||
Sbjct: 18 gaggtagtaggttgtatagtttcaggg 44
>27324_mdo-let-7f-2:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 6 gaggtagtagattgtatagttttaggg 32
>27637_mml-let-7f-2:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 9 gaggtagtagattgtatagttttaggg 35
>28347_hsa-let-7f-2:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 9 gaggtagtagattgtatagttttaggg 35
>30134_ptr-let-7f-2:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 9 gaggtagtagattgtatagttttaggg 35
>30739_ppy-let-7f-2:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 9 gaggtagtagattgtatagttttaggg 35
>31414_oan-let-7f-2:mirbase
Length = 130
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 32 gaggtagtagattgtatagttttaggg 58
>31760_mmu-let-7f-2:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 9 gaggtagtagattgtatagttttaggg 35
>32646_rno-let-7f-2:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 9 gaggtagtagattgtatagttttaggg 35
>33116_bta-let-7f-2:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 9 gaggtagtagattgtatagttttaggg 35
>33902_ssc-let-7f:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||| ||| ||||||||||||
Sbjct: 9 gaggtagtagattgtatagttttaggg 35
>34167_dre-let-7a-3:mirbase
Length = 107
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 gaggtagtaggttgcatagttttaggg 34
|||||||||||||| ||||||| ||||
Sbjct: 19 gaggtagtaggttgtatagtttgaggg 45
