miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27635_mml-let-7e:mirbase
Length = 79
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 61
Query: 61 ctcctagctttccccagg 78
||||||||||||||||||
Sbjct: 62 ctcctagctttccccagg 79
>28345_hsa-let-7e:mirbase
Length = 79
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 61
Query: 61 ctcctagctttccccagg 78
||||||||||||||||||
Sbjct: 62 ctcctagctttccccagg 79
>30737_ppy-let-7e:mirbase
Length = 79
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 61
Query: 61 ctcctagctttccccagg 78
||||||||||||||||||
Sbjct: 62 ctcctagctttccccagg 79
>33114_bta-let-7e:mirbase
Length = 79
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 61
Query: 61 ctcctagctttccccagg 78
||||||||||||||||||
Sbjct: 62 ctcctagctttccccagg 79
>26933_eca-let-7e:mirbase
Length = 79
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 ccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggc 61
Query: 61 ctcctagctttccccagg 78
||||||||||||||||||
Sbjct: 62 ctcctagctttccccagg 79
>33901_ssc-let-7e:mirbase
Length = 80
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 ccgggctgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggc 63
Query: 61 ctcctagctttccccag 77
|||||||||||||||||
Sbjct: 64 ctcctagctttccccag 80
>31758_mmu-let-7e:mirbase
Length = 93
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 9 ccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacggc 68
Query: 61 ctcctagctttccccagg 78
||||||||||||||||||
Sbjct: 69 ctcctagctttccccagg 86
>32644_rno-let-7e:mirbase
Length = 93
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 9 ccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacggc 68
Query: 61 ctcctagctttccccagg 78
||||||||||||||||||
Sbjct: 69 ctcctagctttccccagg 86
>33100_rno-mir-3596c:mirbase
Length = 117
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Minus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 100 ccgggctgaggtaggaggttgtatagttgaggaagacacccgaggagatcactatacggc 41
Query: 61 ctcctagctttccccagg 78
||||||||||||||||||
Sbjct: 40 ctcctagctttccccagg 23
>26609_cfa-let-7e:mirbase
Length = 67
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgaggtaggaggttgtatagttgaggaggacacccacggagatcactatacggcctccta 60
Query: 67 gctttcc 73
|||||||
Sbjct: 61 gctttcc 67
>25676_xtr-let-7a:mirbase
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 4 ggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctc 63
||||||||||| |||||||||||||||||| ||||| |||||||| ||| ||| |||||
Sbjct: 11 ggctgaggtagtaggttgtatagttgaggataacaccaaaggagataactgtacagcctc 70
Query: 64 ctagctttccc 74
||| |||||||
Sbjct: 71 ctatctttccc 81
>34525_fru-let-7a-1:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| |||||||||||||||| |||||| ||||||| ||| ||| ||||||||
Sbjct: 6 tgaggtagtaggttgtatagttgagagtgacaccacaggagatgactgtacagcctccta 65
Query: 67 gctttccc 74
||||||||
Sbjct: 66 gctttccc 73
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| |||||||||||||||| |||||| ||||||| ||| ||| ||||||||
Sbjct: 6 tgaggtagtaggttgtatagttgagagtgacaccacaggagataactgtacagcctccta 65
Query: 67 gctttccc 74
||||||||
Sbjct: 66 gctttccc 73
>27630_mml-let-7a-2:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 4 ggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctc 63
||||||||||| ||||||||||||| || | ||| | | |||||| ||| ||| |||||
Sbjct: 2 ggctgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctc 61
Query: 64 ctagctttcc 73
||||||||||
Sbjct: 62 ctagctttcc 71
>25869_gga-let-7a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||||| | |||||| ||| ||| |||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacaccaagggagataactgtacaacctccta 64
Query: 67 gctttcc 73
|||||||
Sbjct: 65 gctttcc 71
>26376_tgu-let-7a-2:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||||| | |||||| ||| ||| |||||||
Sbjct: 11 tgaggtagtaggttgtatagtttagaattacaccaagggagataactgtacaacctccta 70
Query: 67 gctttcc 73
|||||||
Sbjct: 71 gctttcc 77
>26606_cfa-let-7a-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 17 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 76
Query: 67 gctttcc 73
|||||||
Sbjct: 77 gctttcc 83
>26929_eca-let-7a:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 67 gctttcc 73
|||||||
Sbjct: 65 gctttcc 71
>27319_mdo-let-7a-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 67 gctttcc 73
|||||||
Sbjct: 65 gctttcc 71
>28340_hsa-let-7a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 67 gctttcc 73
|||||||
Sbjct: 65 gctttcc 71
>30127_ptr-let-7a-2:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 67 gctttcc 73
|||||||
Sbjct: 65 gctttcc 71
>30732_ppy-let-7a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 67 gctttcc 73
|||||||
Sbjct: 65 gctttcc 71
>33109_bta-let-7a-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 5 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 64
Query: 67 gctttcc 73
|||||||
Sbjct: 65 gctttcc 71
>25411_pma-let-7a-4:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 2 cgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcc 61
|||| |||||||| ||||||||||||| || | ||||| | |||||| ||| ||| ||
Sbjct: 6 cggggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacc 65
Query: 62 tcctagctttcccc 75
| ||||||||||||
Sbjct: 66 ttctagctttcccc 79
>32639_rno-let-7a-2:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 4 ggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctc 63
||||||||||| ||||||||||||| || ||| | | |||||| ||| ||| |||||
Sbjct: 14 ggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctc 73
Query: 64 ctagctttcc 73
||||||||||
Sbjct: 74 ctagctttcc 83
>33098_rno-mir-3596a:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 1e-05
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 4 ggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctc 63
||||||||||| ||||||||||||| || ||| | | |||||| ||| ||| |||||
Sbjct: 91 ggctgaggtagtaggttgtatagtttagagttacaacaagggagataactgtacagcctc 32
Query: 64 ctagctttcc 73
||||||||||
Sbjct: 31 ctagctttcc 22
>38846_lgi-let-7:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgag 31
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>24642_bfl-let-7a-2:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgag 31
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>34166_dre-let-7a-2:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 ggctgaggtaggaggttgtatagtt 28
||||||||||| |||||||||||||
Sbjct: 8 ggctgaggtagtaggttgtatagtt 32
>34862_sko-let-7:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgag 31
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>34958_isc-let-7:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgag 31
|||||||| ||||||||||||||||
Sbjct: 21 tgaggtagtaggttgtatagttgag 45
>38593_ppc-let-7:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 gctgaggtaggaggttgtatagtt 28
|||||||||| |||||||||||||
Sbjct: 15 gctgaggtagtaggttgtatagtt 38
>34168_dre-let-7a-4:mirbase
Length = 93
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 2 cgggctgaggtaggaggttgtatagtt 28
|||| |||||||| |||||||||||||
Sbjct: 10 cgggatgaggtagtaggttgtatagtt 36
