miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;ABRQ01276450.1/1153-1077 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
Query: 61 ctcctagctttccccag 77
|||||||||||||||||
Sbjct: 61 ctcctagctttccccag 77
>RF00027;let-7;ABRO01282771.1/6704-6628 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 145 bits (73), Expect = 9e-35
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 ccgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ccgggctgaggtaggaggttgtatagttgaggaagacacccaaggagatcactatacggc 60
Query: 61 ctcctagctttccccag 77
|||||||||||||||||
Sbjct: 61 ctcctagctttccccag 77
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 56.0 bits (28), Expect = 7e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || |||||| ||||||| ||| ||| ||||||||
Sbjct: 7 tgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcctccta 66
Query: 67 gctttccc 74
||||||||
Sbjct: 67 gctttccc 74
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||||| | ||||||| |||||| ||| ||| |||||||
Sbjct: 7 tgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaacctccta 66
Query: 67 gcttt 71
|||||
Sbjct: 67 gcttt 71
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| |||||||||||||||| | |||||| ||||| ||| ||| |||||||
Sbjct: 7 tgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctccta 66
Query: 67 gctttccc 74
||||||||
Sbjct: 67 gctttccc 74
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || ||| || ||||||| ||| ||| ||||||||
Sbjct: 7 tgaggtagtaggttgtatagttcagagtgacgccacaggagatgactgtacagcctccta 66
Query: 67 gctttccc 74
||||||||
Sbjct: 67 gctttccc 74
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcctccta 66
|||||||| ||||||||||||| || | ||| | | |||||| ||| ||| ||||||||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 66
Query: 67 gctttcc 73
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 ctgaggtaggaggttgtatagttgag 31
||||||||| ||||||||||||||||
Sbjct: 6 ctgaggtagtaggttgtatagttgag 31
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 43 aggagatcactatacggcctcctagctttcccc 75
||||||| ||| ||| |||||||||||||||||
Sbjct: 44 aggagataactgtacagcctcctagctttcccc 76
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 ggctgaggtaggaggttgtatagtt 28
||||||||||| |||||||||||||
Sbjct: 4 ggctgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgaggtaggaggttgtatagttgag 31
|||||||| ||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttgag 31
