miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ttccactctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatatta 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 ttccactctagcagcacgtaaatattggcgtagtgaaatatatattaaacaccaatatta 61
Query: 61 ctgtgctgctttagtgtgac 80
||||||||||||||||||||
Sbjct: 62 ctgtgctgctttagtgtgac 81
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 137 bits (69), Expect = 1e-33
Identities = 79/81 (97%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 ttccactctagcagcacgtaaatattgg-cgtagtgaaatatatgttaaacaccaatatt 59
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 2 ttccactctagcagcacgtaaatattgggcgtagtgaaatatatattaaacaccaatatt 61
Query: 60 actgtgctgctttagtgtgac 80
|||||||||||||||||||||
Sbjct: 62 actgtgctgctttagtgtgac 82
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 ttccactctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatatta 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 2 ttccactctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatatta 61
Query: 61 ctgtgctgctttagtgtgac 80
||||||||||| ||||||||
Sbjct: 62 ctgtgctgcttcagtgtgac 81
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 ttccactctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatatta 60
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 9 ttccactctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatta 68
Query: 61 ctgtgctgctttagtgtgac 80
|||||||||||||||||||
Sbjct: 69 ttgtgctgctttagtgtgac 88
>32659_rno-mir-16:mirbase
Length = 95
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 ttccactctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatatta 60
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 9 ttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatta 68
Query: 61 ctgtgctgctttagtgtgac 80
|||||||||||||||||||
Sbjct: 69 ttgtgctgctttagtgtgac 88
>26947_eca-mir-16:mirbase
Length = 81
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 ttccactctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatatta 60
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 2 ttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatta 61
Query: 61 ctgtgctgctttag 74
|||||||||||||
Sbjct: 62 ttgtgctgctttag 75
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 105 bits (53), Expect = 5e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 6 ctctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatattactgtg 65
||||||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||
Sbjct: 5 ctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtg 64
Query: 66 ctgctttag 74
|||||||||
Sbjct: 65 ctgctttag 73
>33131_bta-mir-16b:mirbase
Length = 93
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatattactgtgctg 68
|||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||
Sbjct: 17 tagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtgctg 76
Query: 69 ctttagtgtgac 80
|||||| |||||
Sbjct: 77 ctttagcgtgac 88
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 97.6 bits (49), Expect = 1e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatattactgtgctg 68
|||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct: 1 tagcagcacgtaaatattggcgtagtgaaataaaaattaaacaccaatattattgtgctg 60
Query: 69 cttta 73
|||||
Sbjct: 61 cttta 65
>25895_gga-mir-16-2:mirbase
Length = 94
Score = 71.9 bits (36), Expect = 6e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 8 ctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatattactgtgct 67
||||||||||||||||||||| ||||| ||||| | |||||| ||||||||| ||||||
Sbjct: 16 ctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattattgtgct 75
Query: 68 gctt 71
||||
Sbjct: 76 gctt 79
>31429_oan-mir-16b:mirbase
Length = 101
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/74 (86%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 6 ctctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatattactgtg 65
||||||||||||||||||||||| |||||||| | |||||| ||||||||| ||||
Sbjct: 18 ctctagcagcacgtaaatattggtgtagtgaa----gtcttaaaccccaatattattgtg 73
Query: 66 ctgctttagtgtga 79
||||||||| ||||
Sbjct: 74 ctgctttagcgtga 87
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 actctagcagcacgtaaatattgg 28
||||||||||||||||||||||||
Sbjct: 10 actctagcagcacgtaaatattgg 33
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>27334_mdo-mir-16:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27480_age-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27589_sla-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28172_mne-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28260_ggo-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30044_ppa-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30753_ppy-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>31428_oan-mir-16a:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 29 tagcagcacgtaaatattggcgt 51
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 16 tagcagcacgtaaatattggcgt 38
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcgt 31
|||||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattggcgt 31
>27541_lla-mir-16:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattggcg 30
||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcg 35
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 ctagcagcacgtaaatattgg 28
|||||||||||||||||||||
Sbjct: 10 ctagcagcacgtaaatattgg 30
>25429_pma-mir-16:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>26399_tgu-mir-16a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattgg 30
>31394_lca-mir-16:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>33130_bta-mir-16a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>34206_dre-mir-16a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 13 tagcagcacgtaaatattgg 32
>34207_dre-mir-16b:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 39 tagcagcacgtaaatattgg 58
>34547_fru-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 13 tagcagcacgtaaatattgg 32
>34695_tni-mir-16:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 tagcagcacgtaaatattgg 28
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
>25896_gga-mir-16c:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 ctctagcagcacgtaaata 24
|||||||||||||||||||
Sbjct: 2 ctctagcagcacgtaaata 20
>26401_tgu-mir-16c:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 ctctagcagcacgtaaata 24
|||||||||||||||||||
Sbjct: 8 ctctagcagcacgtaaata 26
