miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AY866359.1/938-1020 9593:Gorilla gorilla (Western
Gorilla)
Length = 83
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcact 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8 agtaccaaagtgctcatagtgcaggtagttttggcatgactctactgtaatatgggcact 67
Query: 61 tccagtac 68
||||||||
Sbjct: 68 tccagtac 75
>RF00051;mir-17;ABRO01259691.1/1321-1238 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 97.6 bits (49), Expect = 2e-20
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtagtttt-ggcatgactctactgtagtatgggcac 59
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 8 agtaccaaagtgctcatagtgcacgtagttttgggcattgctctactgtagtatgggcac 67
Query: 60 ttccagtac 68
|||||||||
Sbjct: 68 ttccagtac 76
>RF00051;mir-17;FP015951.3/28915-28833 9823:Sus scrofa (pig)
Length = 83
Score = 95.6 bits (48), Expect = 6e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcact 60
|||||||||||||||| ||||||||||| ||| |||| ||||||||||||| ||||||||
Sbjct: 8 agtaccaaagtgctcacagtgcaggtaggttttgcattactctactgtagtgtgggcact 67
Query: 61 tccagtac 68
||||||||
Sbjct: 68 tccagtac 75
>RF00051;mir-17;ABRQ01318667.1/1268-1186 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 81.8 bits (41), Expect = 1e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcact 60
||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||
Sbjct: 8 agtaccaaagtgctcatagtgcaggtagtttgggcattactctactgcagtgcgggcact 67
Query: 61 t 61
|
Sbjct: 68 t 68
>RF00051;mir-17;AAGW01169230.1/2042-2124 9986:Oryctolagus
cuniculus (rabbit)
Length = 83
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcact 60
|||||||||||||||||||||||||||||| | |||| | ||||||||||| || |||||
Sbjct: 8 agtaccaaagtgctcatagtgcaggtagttctagcatcattctactgtagtgtgagcact 67
Query: 61 tccagtac 68
|| |||||
Sbjct: 68 tctagtac 75
>RF00051;mir-17;AAIY01238597.1/3382-3300 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 2 gtaccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcactt 61
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 9 gtaccaaagtgctcatagtgcaggtagtttttatattgctctactgcggtatgggcactt 68
Query: 62 ccagtac 68
||||||
Sbjct: 69 tcagtac 75
>RF00051;mir-17;AAEX02004024.1/7928-8010 9615:Canis lupus
familiaris (dog)
Length = 83
Score = 67.9 bits (34), Expect = 1e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 2 gtaccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcactt 61
||||||||||||||| |||||||||||| | ||| | |||||||||||| |||||||||
Sbjct: 9 gtaccaaagtgctcacagtgcaggtagtctgggcttttctctactgtagtgtgggcactt 68
Query: 62 cc 63
||
Sbjct: 69 cc 70
>RF00051;mir-17;AAPN01018584.1/1896-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtagtttt 32
||||||||||||||||||||||||||||||||
Sbjct: 8 agtaccaaagtgctcatagtgcaggtagtttt 39
>RF00051;mir-17;AAFR03056382.1/2050-2132 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcatagtgcaggtagtttt 32
||||||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtttt 39
>RF00051;mir-17;BX571778.7/42610-42528 10090:Mus musculus (house
mouse)
Length = 83
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcatagtgcaggtagtttt 32
||||||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtttt 39
>RF00051;mir-17;AABR04092601.1/7810-7728 10116:Rattus norvegicus
(Norway rat)
Length = 83
Score = 52.0 bits (26), Expect = 9e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcatagtgcaggtagttttggcatgactctactgtagtatgggcacttc 62
|||||||||||||||||||||||| ||| || ||||||||| ||| || |||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcacttc 69
>RF00051;mir-17;AAWZ01041388.1/821-905 28377:Anolis carolinensis
(green anole)
Length = 85
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 caaagtgctcatagtgcaggtagtt 30
|||||||||||||||||||||||||
Sbjct: 13 caaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;AADN02013295.1/150-68 9031:Gallus gallus (chicken)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtag 28
|||| |||||||||||||||||||||||
Sbjct: 8 agtatcaaagtgctcatagtgcaggtag 35
>RF00051;mir-17;BX511227.7/25357-25277 7955:Danio rerio
(zebrafish)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 ccaaagtgctcatagtgcaggtagt 29
|||||||||||| ||||||||||||
Sbjct: 12 ccaaagtgctcacagtgcaggtagt 36
>RF00051;mir-17;CAAK05051440.1/15885-15799 7955:Danio rerio
(zebrafish)
Length = 87
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 aaagtgctcatagtgcaggtagttt 31
|||||||| ||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagttt 38
>RF00051;mir-17;CAAE01014581.1/3627532-3627453 99883:Tetraodon
nigroviridis
Length = 80
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtagt 29
||||| |||||||| ||||||||||||||
Sbjct: 8 agtactaaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;AANH01000396.1/151070-150987 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtagt 29
||||| |||||||| ||||||||||||||
Sbjct: 8 agtactaaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;BAAF04006740.1/10036-9953 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 agtaccaaagtgctcatagtgcaggtagt 29
||||| |||||||| ||||||||||||||
Sbjct: 8 agtactaaagtgcttatagtgcaggtagt 36
