miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26976_eca-mir-30c:mirbase
Length = 89
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 61
Query: 61 gagggttgtttactccttctgccatgga 88
||||||||||||||||||||||||||||
Sbjct: 62 gagggttgtttactccttctgccatgga 89
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 61
Query: 61 gagggttgtttactccttctgccatgga 88
||||||||||||||||||||||||||||
Sbjct: 62 gagggttgtttactccttctgccatgga 89
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 61
Query: 61 gagggttgtttactccttctgccatgga 88
||||||||||||||||||||||||||||
Sbjct: 62 gagggttgtttactccttctgccatgga 89
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 61
Query: 61 gagggttgtttactccttctgccatgga 88
||||||||||||||||||||||||||||
Sbjct: 62 gagggttgtttactccttctgccatgga 89
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccatgttgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 61
Query: 61 gagggttgtttactccttctgccatgga 88
||||||||||||||||||||||||||||
Sbjct: 62 gagggttgtttactccttctgccatgga 89
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccatgttgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 61
Query: 61 gagggttgtttactccttctgccatgga 88
||||||||||||||||||||||||||||
Sbjct: 62 gagggttgtttactccttctgccatgga 89
>33167_bta-mir-30c:mirbase
Length = 105
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 60
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 11 ccatgccgtagtgtgtgtaaacatcctacactctcagctgtgagctcgaggtggctggga 70
Query: 61 gagggttgtttactccttctgccatgga 88
||||||||||||||||||||||||||||
Sbjct: 71 gagggttgtttactccttctgccatgga 98
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 8 gtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggtt 67
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2 gtagtgcgtgtaaacatcctacactctcagctgtgagctcgaggtggctgggagagggtt 61
Query: 68 gtttactccttctgccatg 86
|||||||||||||||||||
Sbjct: 62 gtttactccttctgccatg 80
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 121 bits (61), Expect = 9e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 60
Query: 76 c 76
|
Sbjct: 61 c 61
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 119 bits (60), Expect = 3e-28
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 1 ccatgctgtagtgtgtgtaaacatcctacactctcagctgtgagctcaaggtggctggga 60
||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 2 ccatgctgtagcacgtgtaaacatcctacactctcagctgtgaactcgaggtggctggga 61
Query: 61 gagggttgtttactccttctgccatgga 88
|||| |||||||| ||||||||||||||
Sbjct: 62 gaggattgtttacgccttctgccatgga 89
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttactc 75
|||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaacataaggtggctgggagaagggtgtttactc 76
Query: 76 cttctgccatgga 88
| ||||||||||
Sbjct: 77 cccctgccatgga 89
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtga 43
||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtga 41
>32691_rno-mir-30c-2:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtga 43
||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtga 41
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtg 40
>25919_gga-mir-30c-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>26425_tgu-mir-30c:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>27556_lla-mir-30c:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>27684_mml-mir-30c-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>28192_mne-mir-30c:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>33943_ssc-mir-30c-2:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36
>25462_pma-mir-30g:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 gtgtaaacatcctacactctcagctgtgag 44
||||||||||||| ||||||||||||||||
Sbjct: 11 gtgtaaacatccttcactctcagctgtgag 40
>31452_oan-mir-30c:mirbase
Length = 122
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgt 41
||||||||||||||||||||||||||
Sbjct: 31 tgtaaacatcctacactctcagctgt 56
>34249_dre-mir-30c:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 gtgtaaacatcctacactctcagctg 40
||||||||||||||||||||||||||
Sbjct: 10 gtgtaaacatcctacactctcagctg 35
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36
>33170_bta-mir-30f:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtg 42
|||||||| ||||||||||||||||||
Sbjct: 14 tgtaaacaccctacactctcagctgtg 40
>25461_pma-mir-30f-2:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 gtgtaaacatcctacactctcagctg 40
||||||||| ||||||||||||||||
Sbjct: 10 gtgtaaacaccctacactctcagctg 35
>34574_fru-mir-30c:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gtgtaaacatcctacactctc 35
|||||||||||||||||||||
Sbjct: 8 gtgtaaacatcctacactctc 28
>34721_tni-mir-30c:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gtgtaaacatcctacactctc 35
|||||||||||||||||||||
Sbjct: 9 gtgtaaacatcctacactctc 29
>34248_dre-mir-30b:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactctcagctgtgagct 46
||||||||||||||| ||||||||||||||
Sbjct: 16 tgtaaacatcctaca--ctcagctgtgagct 44
