miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAKN02045137.1/14420-14354 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 125 bits (63), Expect = 1e-28
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 10 ccgcggtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgc 69
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ccgcggtgcattgctgttgcattgcatgtgtgtgaggcgggtgcagtgcctcggcagtgc 60
Query: 70 agcccgg 76
|||||||
Sbjct: 61 agcccgg 67
>RF00667;mir-33;AAGU02562745.1/2088-2024 9785:Loxodonta africana
(African savanna elephant)
Length = 65
Score = 95.6 bits (48), Expect = 1e-19
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 14 ggtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgcagcc 73
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 5 ggtgcattgctgttgcattgcacgtgtgt--ggcgggtgcagtgcctcagcagtgcagcc 62
Query: 74 cgg 76
|||
Sbjct: 63 cgg 65
>RF00667;mir-33;AAIY01371081.1/711-777 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 85.7 bits (43), Expect = 9e-17
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 14 ggtgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgcagcc 73
|||||||||| ||||||||||||||||||| | | |||||||||| ||||||||||||||
Sbjct: 5 ggtgcattgcggttgcattgcacgtgtgtgcgccaggtgcagtgcttcggcagtgcagcc 64
Query: 74 cgg 76
|||
Sbjct: 65 cgg 67
>RF00667;mir-33;AAYZ01315512.1/404-338 9978:Ochotona princeps
(American pika)
Length = 67
Score = 81.8 bits (41), Expect = 1e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 16 tgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgcagcccg 75
|||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 7 tgcattgctggtgcattgcacgtgtgcgcagcaggtgcagtgcctcggcagtgcagcccg 66
Query: 76 g 76
|
Sbjct: 67 g 67
>RF00667;mir-33;AAQQ01305246.1/1096-1158 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 63
Score = 75.8 bits (38), Expect = 9e-14
Identities = 56/61 (91%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 16 tgcattgctgttgcattgcacgtgtgtgaggcgggtgcagtgcctcggcagtgcagcccg 75
|||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 5 tgcattgctgctgcattgcacgcgtgtg--gcgggtgcagtgcctcagcagtgcagcccg 62
Query: 76 g 76
|
Sbjct: 63 g 63
>RF00667;mir-33;ABJB011070400.1/4565-4636 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gcggtgcattgctgttgcattgcacgt 38
|||||||||||| ||||||||||||||
Sbjct: 3 gcggtgcattgcagttgcattgcacgt 29
