miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABRQ01219522.1/1254-1171 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 tgctcggtttgtaggcagtgtcattagctgattgtactgtggtggttacaatcactaact 60
||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||
Sbjct: 2 tgctcggtttgtaggcagtgtaattagctgattgtactctggagcttacaatcactaact 61
Query: 61 ccactgccatcaaaacaaggcac 83
|||||||||||||||||||||||
Sbjct: 62 ccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABRO01055556.1/3019-2935 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 111 bits (56), Expect = 1e-24
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 tgctcggtttgtaggcagtgtcattagctgattgtactgtggtggtt-acaatcactaac 59
||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||
Sbjct: 2 tgctcggtttgtaggcagtgtaattagctgattgtacctcggtgctttacaatcactaac 61
Query: 60 tccactgccatcaaaacaaggcac 83
||||||||||||||||||||||||
Sbjct: 62 tccactgccatcaaaacaaggcac 85
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 93.7 bits (47), Expect = 3e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 1 tgctcggtttgtaggcagtgtcattagctgattgtactgtggtggttacaatcactaact 60
||||||||||||||||||||| ||||||||||||| | | || | ||||||||||||
Sbjct: 2 tgctcggtttgtaggcagtgtagttagctgattgtattctactgcctgcaatcactaact 61
Query: 61 ccactgccatcaaaacaaggcac 83
|||||||||||||||||||||||
Sbjct: 62 ccactgccatcaaaacaaggcac 84
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 69.9 bits (35), Expect = 5e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 49 caatcactaactccactgccatcaaaacaaggcac 83
|||||||||||||||||||||||||||||||||||
Sbjct: 50 caatcactaactccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 48 acaatcactaactccactgccatcaaaacaaggcac 83
||||||||||||| |||||||| |||||||||||||
Sbjct: 49 acaatcactaacttcactgccaccaaaacaaggcac 84
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 48 acaatcactaactccactgccatcaaaacaaggcac 83
||||||||||| | ||||||||||||||||||||||
Sbjct: 49 acaatcactaaattcactgccatcaaaacaaggcac 84
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 ggtttgtaggcagtgtcattagctgattgt 35
|||||||||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtagttagctgattgt 36
