miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28403_hsa-mir-34c:mirbase
Length = 77
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 61
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 62 gccaggtaaaaagatt 77
>28404_hsa-mir-34c:mirbase
Length = 77
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 61
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 62 gccaggtaaaaagatt 77
>30793_ppy-mir-34c:mirbase
Length = 77
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 61
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 62 gccaggtaaaaagatt 77
>30794_ppy-mir-34c:mirbase
Length = 77
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 61
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 62 gccaggtaaaaagatt 77
>26987_eca-mir-34c:mirbase
Length = 77
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 gtctagttactaggcagtgtagttagctgattgctaataataccaatcactaaccacacg 61
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 62 gccaggtaaaaagatt 77
>33177_bta-mir-34c:mirbase
Length = 77
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 gtctagttactaggcagtgtagttagctgattgctaataataccaatcactaaccacacg 61
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 62 gccaggtaaaaagatt 77
>31818_mmu-mir-34c:mirbase
Length = 77
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacaca 61
Query: 61 gccaggtaaaaaga 74
||||||||||||||
Sbjct: 62 gccaggtaaaaaga 75
>32699_rno-mir-34c:mirbase
Length = 77
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacaca 61
Query: 61 gccaggtaaaaaga 74
||||||||||||||
Sbjct: 62 gccaggtaaaaaga 75
>27693_mml-mir-34c:mirbase
Length = 77
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2 gtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacacg 61
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 62 gccaggtaaaaagatt 77
>27694_mml-mir-34c:mirbase
Length = 77
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2 gtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacacg 61
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 62 gccaggtaaaaagatt 77
>33949_ssc-mir-34c:mirbase
Length = 80
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 2 gtctagttactaggcagtgtagttagctgattgctgataaaaccaatcactaaccacacg 61
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 62 gccaggtaaaaagatt 77
>26665_cfa-mir-34c:mirbase
Length = 55
Score = 109 bits (55), Expect = 3e-25
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
>31462_oan-mir-34:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 10 gtctagttactaggcagtgtagttagctgattgctattaacaccaatcactagccacaca 69
Query: 61 gccaggtaaaaaga 74
||||||||||||||
Sbjct: 70 gccaggtaaaaaga 83
>25927_gga-mir-34c:mirbase
Length = 74
Score = 87.7 bits (44), Expect = 1e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 6 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccag 65
||||| ||||||||||||||||||||||| | || |||||||||||||||||| |||||
Sbjct: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
Query: 66 gtaaaaag 73
||||||||
Sbjct: 67 gtaaaaag 74
>26433_tgu-mir-34b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattgc 34
|||||||||||||||||||||||
Sbjct: 41 aggcagtgtagttagctgattgc 63
>25743_xtr-mir-34b-1:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>25744_xtr-mir-34b-2:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 4 aggcagtgtagttagctgattg 25
>25745_xtr-mir-34b-3:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>25746_xtr-mir-34b-4:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 4 aggcagtgtagttagctgattg 25
>25926_gga-mir-34b:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>26434_tgu-mir-34c-1:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 11 aggcagtgtagttagctgattg 32
>26435_tgu-mir-34c-2:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 11 aggcagtgtagttagctgattg 32
>26664_cfa-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>26985_eca-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>26986_eca-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>31816_mmu-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>31817_mmu-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>32698_rno-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>33176_bta-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>34254_dre-mir-34b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
|||||||||| ||||||||||||
Sbjct: 13 taggcagtgttgttagctgattg 35
