miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABVD01341709.1/1775-1696 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 80
Score = 135 bits (68), Expect = 9e-32
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3 gtctggttactaggcagtgtagttagctgattgctattagtaccaatcactaaccacacg 62
Query: 61 gccaggtaaaaagatt 76
||||||||||||||||
Sbjct: 63 gccaggtaaaaagatt 78
>RF00456;mir-34;ABRQ01219522.1/667-588 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 127 bits (64), Expect = 2e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtctggttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacaca 62
Query: 61 gccaggtaaaaagatt 76
|||||||||| |||||
Sbjct: 63 gccaggtaaagagatt 78
>RF00456;mir-34;ABRO01055556.1/2540-2461 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 123 bits (62), Expect = 3e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 3 gtctagttactaggcagtgtagttagctgattgctgaccgtaccaatcactaaccacacg 62
Query: 61 gccaggtaaaaaga 74
||||||||||||||
Sbjct: 63 gccaggtaaaaaga 76
>RF00456;mir-34;AAPN01276489.1/4603-4524 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 107 bits (54), Expect = 2e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 3 gtctagttactaggcagtgtagttagctgattgctattaacaccaatcactagccacaca 62
Query: 61 gccaggtaaaaaga 74
||||||||||||||
Sbjct: 63 gccaggtaaaaaga 76
>RF00456;mir-34;AADN02058045.1/6075-5997 9031:Gallus gallus
(chicken)
Length = 79
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 6 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccag 65
||||| ||||||||||||||||||||||| | || |||||||||||||||||| |||||
Sbjct: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
Query: 66 gtaaaaag 73
||||||||
Sbjct: 67 gtaaaaag 74
>RF00456;mir-34;ABQF01045704.1/20460-20539 59729:Taeniopygia
guttata
Length = 80
Score = 75.8 bits (38), Expect = 7e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccaggtaaaa 71
||||||||||||||||||||||| | || | ||||||||| ||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattgcccaaagcaacaatcactagccacacggccaggtaaaa 73
Query: 72 ag 73
||
Sbjct: 74 ag 75
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
|||||||||||||||||||||||
Sbjct: 13 taggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
|||||||||||||||||||||||
Sbjct: 13 taggcagtgtagttagctgattg 35
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 taggcagtgtagttagctgattg 33
|||||||||||||||||||||||
Sbjct: 13 taggcagtgtagttagctgattg 35
>RF00456;mir-34;AAWZ01034188.1/3307-3229 28377:Anolis carolinensis
(green anole)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aggcagtgtagttagctgattg 33
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
