miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 147 bits (74), Expect = 2e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 tcatccctgggtggggatttgttgcattacttgtgttccacaaaagtattgcacttgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tcatccctgggtggggatttgttgcattacttgtgttccacaaaagtattgcacttgtcc 62
Query: 61 cggcctgtgagaga 74
||||||||||||||
Sbjct: 63 cggcctgtgagaga 76
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 75.8 bits (38), Expect = 7e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 tcatccctgggtggggatttgttgcattacttgtgttccaca-aaagtattgcacttgtc 59
|||||| |||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 3 tcatccgtgggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttgtc 62
Query: 60 ccggcctgtg 69
||||||||||
Sbjct: 63 ccggcctgtg 72
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 75.8 bits (38), Expect = 7e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 tcatccctgggtggggatttgttgcattacttgtgttcca-caaaagtattgcacttgtc 59
|||||| ||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct: 3 tcatccatgggtggggatttgttgcactacttgtgttatatgtaaagtattgcacttgtc 62
Query: 60 ccggcctgtg 69
||||||||||
Sbjct: 63 ccggcctgtg 72
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 10 ggtggggatttgttgcattacttgtgttccaca--aaagtattgcacttgtcccggcctg 67
||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 12 ggtggggatttgtcgcattacttgtgttctatggtaaagtattgcacttgtcccggcctg 71
Query: 68 tg 69
||
Sbjct: 72 tg 73
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 69.9 bits (35), Expect = 4e-12
Identities = 61/69 (88%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 4 tccctgggtggggatttgttgcattacttgtg---ttccacaaaagtattgcacttgtcc 60
||||||||| |||||||||||||||||||||| | || || ||||||||||||||||
Sbjct: 6 tccctgggttgggatttgttgcattacttgtgggttccctgaacagtattgcacttgtcc 65
Query: 61 cggcctgtg 69
|||||||||
Sbjct: 66 cggcctgtg 74
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 10 ggtggggatttgttgcattacttgtgttccaca-aaagtattgcacttgtcccggcctg 67
|||||||||| || |||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 12 ggtggggattggtggcattacttgtgttagatataaagtattgcacttgtcccggcctg 70
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 60.0 bits (30), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 tcatccctgggtggggatttgttgcattacttgtgttc-cacaaaagtattgcacttgtc 59
||||||||||||||||||| | |||||||||||||| | ||||||||||||||||
Sbjct: 3 tcatccctgggtggggattgggtgcattacttgtgtcctgtgtgaagtattgcacttgtc 62
Query: 60 ccggcctgtg 69
||||||||||
Sbjct: 63 ccggcctgtg 72
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 9 gggtggggatttgttgcattacttg----tgt-tccacaaaagtattgcacttgtcccgg 63
||||||||||||||||||||||||| ||| || | || |||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgatcttgtgtctataagagtattgcacttgtcccgg 70
Query: 64 cctgtg 69
||||||
Sbjct: 71 cctgtg 76
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 tgggtggggatttgttgcattacttgt 34
|||||||||||||||||||||||||||
Sbjct: 10 tgggtggggatttgttgcattacttgt 36
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 agtattgcacttgtcccggcctgtg 69
|||||||||||||||||||||||||
Sbjct: 49 agtattgcacttgtcccggcctgtg 73
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 aagtattgcacttgtcccggcctgtga 70
|||||||||||||||||||||||||||
Sbjct: 43 aagtattgcacttgtcccggcctgtga 69
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gggtggggatttgttgcattacttg 33
|||||||||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttg 35
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 agtattgcacttgtcccggcctgtg 69
|||||||||||||||||||||||||
Sbjct: 52 agtattgcacttgtcccggcctgtg 76
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgtg 69
||||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgtg 69
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgtg 69
||||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgtg 70
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgt 68
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgt 68
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgt 68
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgt 68
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgt 68
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgt 68
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgt 68
|||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgt 70
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 gtattgcacttgtcccggcctgt 68
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 agtattgcacttgtcccggcct 66
||||||||||||||||||||||
Sbjct: 50 agtattgcacttgtcccggcct 71
>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
floridae (Florida lancelet)
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 agtattgcacttgtcccggcct 66
||||||||||||||||||||||
Sbjct: 46 agtattgcacttgtcccggcct 67
>RF00464;mir-92;AAGJ02142502.1/20488-20574 7668:Strongylocentrotus
purpuratus
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tattgcacttgtcccggcctg 67
|||||||||||||||||||||
Sbjct: 57 tattgcacttgtcccggcctg 77
>RF00464;mir-92;ABEP02031048.1/3570-3494 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 ccacaaaagtattgcacttgtcccggcct 66
||||| || ||||||||||||||||||||
Sbjct: 38 ccacacaaatattgcacttgtcccggcct 66
