miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28426_hsa-mir-122:mirbase
Length = 85
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattat 61
Query: 61 cacactaaatagctactgctaggc 84
||||||||||||||||||||||||
Sbjct: 62 cacactaaatagctactgctaggc 85
>30814_ppy-mir-122:mirbase
Length = 85
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattat 61
Query: 61 cacactaaatagctactgctaggc 84
||||||||||||||||||||||||
Sbjct: 62 cacactaaatagctactgctaggc 85
>27714_mml-mir-122a:mirbase
Length = 85
Score = 151 bits (76), Expect = 9e-38
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattat 61
Query: 61 cacactaaatagctactgctaggc 84
||||||||||||||||| ||||||
Sbjct: 62 cacactaaatagctactactaggc 85
>33197_bta-mir-122:mirbase
Length = 85
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattat 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 2 cttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattat 61
Query: 61 cacactaaatagctactgctaggc 84
|||||||||||||||||| |||||
Sbjct: 62 cacactaaatagctactgttaggc 85
>33967_ssc-mir-122:mirbase
Length = 85
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattat 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 2 cttagcagagctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattat 61
Query: 61 cacactaaatagctactgctaggc 84
|||||||||||||||||| |||||
Sbjct: 62 cacactaaatagctactgttaggc 85
>29379_hsa-mir-3591:mirbase
Length = 73
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 66 taaatagctactg 78
|||||||||||||
Sbjct: 13 taaatagctactg 1
>29380_hsa-mir-3591:mirbase
Length = 73
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 14
Query: 66 taaatagctactg 78
|||||||||||||
Sbjct: 13 taaatagctactg 1
>25937_gga-mir-122-1:mirbase
Length = 77
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
Query: 66 taaatagctactg 78
|||||||||||||
Sbjct: 61 taaatagctactg 73
>32716_rno-mir-122:mirbase
Length = 85
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattat 60
|||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct: 2 cttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcat 61
Query: 61 cacactaaatagctactgctaggc 84
||||||||| ||||||||||||||
Sbjct: 62 cacactaaacagctactgctaggc 85
>33091_rno-mir-3591:mirbase
Length = 109
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 1 cttagcagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattat 60
|||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct: 95 cttagcagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcat 36
Query: 61 cacactaaatagctactgctaggc 84
||||||||| ||||||||||||||
Sbjct: 35 cacactaaacagctactgctaggc 12
>27006_eca-mir-122:mirbase
Length = 66
Score = 115 bits (58), Expect = 5e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 9 agctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacactaa 68
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaa 60
Query: 69 atagct 74
||||||
Sbjct: 61 atagct 66
>25938_gga-mir-122-2:mirbase
Length = 77
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
Query: 66 taaatagctactg 78
|||||||||||||
Sbjct: 61 taaatagctactg 73
>31478_oan-mir-122:mirbase
Length = 111
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 21 cagagctgtggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacac 80
Query: 66 taaatagctactg 78
|||||||||||||
Sbjct: 81 taaatagctactg 93
>31837_mmu-mir-122:mirbase
Length = 66
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 9 agctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacactaa 68
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaaccatcaaacgccattatcacactaa 60
Query: 69 atagct 74
||||||
Sbjct: 61 atagct 66
>27371_mdo-mir-122:mirbase
Length = 74
Score = 105 bits (53), Expect = 5e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccagtctatcaaacgccattatcacac 60
Query: 66 taaatagctactg 78
|||||||||||||
Sbjct: 61 taaatagctactg 73
>26685_cfa-mir-122:mirbase
Length = 58
Score = 99.6 bits (50), Expect = 3e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 14 tggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacactaaata 71
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 1 tggagtgtgacaatggtgtttgtgtccaaactatcaaacgccattatcacactaaata 58
>26449_tgu-mir-122:mirbase
Length = 72
Score = 93.7 bits (47), Expect = 2e-20
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 3 cagagctgtggagtgtgacaatggtgtttgtgtc-catctatcaaacgccattatcacac 61
Query: 66 taaatag 72
|||||||
Sbjct: 62 taaatag 68
>34731_tni-mir-122:mirbase
Length = 66
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 9 agctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacactaa 68
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtcctttctttcaaacgccattatcacactaa 60
Query: 69 atagct 74
||||||
Sbjct: 61 atagct 66
>25762_xtr-mir-122:mirbase
Length = 69
Score = 81.8 bits (41), Expect = 7e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 8 gagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacacta 67
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 1 gagctatggagtgtgacaatggtgtttgtgtcagagctatcaaacgccattatcacacta 60
Query: 68 a 68
|
Sbjct: 61 a 61
>34270_dre-mir-122:mirbase
Length = 76
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtc-taaattatcaaacgccattatcaca 64
||||||||||||||||||||||||||||||| || | | ||||||||||||||||||
Sbjct: 3 cagagctgtggagtgtgacaatggtgtttgtatcatctgtcgtcaaacgccattatcaca 62
Query: 65 ctaaatagc 73
|||||||||
Sbjct: 63 ctaaatagc 71
>34584_fru-mir-122:mirbase
Length = 66
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 9 agctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacactaa 68
|||| ||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 1 agctatggagtgtgacaatggtgtttgtttcctttctttcaaacgccattatcacactaa 60
Query: 69 atagct 74
||||||
Sbjct: 61 atagct 66
