miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 99.6 bits (50), Expect = 5e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct: 1 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 60
Query: 66 taaatagctactgc 79
|||| |||||||||
Sbjct: 61 taaacagctactgc 74
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 95.6 bits (48), Expect = 8e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 8 gagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacacta 67
||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 62
Query: 68 aatagctactgc 79
||||||||||||
Sbjct: 63 aatagctactgc 74
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtctaaattatcaaacgccattatcacac 65
||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 60
Query: 66 taaatagctac 76
|||||||||||
Sbjct: 61 taaatagctac 71
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 73.8 bits (37), Expect = 3e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 6 cagagctgtggagtgtgacaatggtgtttgtgtc-taaattatcaaacgccattatcaca 64
||||||||||||||||||||||||||||||| || | | ||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtatcatctgtcgtcaaacgccattatcaca 60
Query: 65 ctaaatagc 73
|||||||||
Sbjct: 61 ctaaatagc 69
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 atcaaacgccattatcacactaaata 71
||||||||||||||||||||||||||
Sbjct: 42 atcaaacgccattatcacactaaata 67
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tggagtgtgacaatggtgtttgt 36
|||||||||||||||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgt 31
