miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28430_hsa-mir-125a:mirbase
Length = 86
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 61
Query: 61 gttcttgggagcctggtgtctggcc 85
|||||||||||||||| ||||||||
Sbjct: 62 gttcttgggagcctggcgtctggcc 86
>28431_hsa-mir-125a:mirbase
Length = 86
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 61
Query: 61 gttcttgggagcctggtgtctggcc 85
|||||||||||||||| ||||||||
Sbjct: 62 gttcttgggagcctggcgtctggcc 86
>30817_ppy-mir-125a:mirbase
Length = 86
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 61
Query: 61 gttcttgggagcctggtgtctggcc 85
|||||||||||||||| ||||||||
Sbjct: 62 gttcttgggagcctggcgtctggcc 86
>30818_ppy-mir-125a:mirbase
Length = 86
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 61
Query: 61 gttcttgggagcctggtgtctggcc 85
|||||||||||||||| ||||||||
Sbjct: 62 gttcttgggagcctggcgtctggcc 86
>27717_mml-mir-125a:mirbase
Length = 86
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccagtctctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 61
Query: 61 gttcttgggagcctggtgtctggcc 85
|||||||||||||||| ||||||||
Sbjct: 62 gttcttgggagcctggcgtctggcc 86
>27718_mml-mir-125a:mirbase
Length = 86
Score = 153 bits (77), Expect = 2e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 gccagtctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccagtctctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgag 61
Query: 61 gttcttgggagcctggtgtctggcc 85
|||||||||||||||| ||||||||
Sbjct: 62 gttcttgggagcctggcgtctggcc 86
>27009_eca-mir-125a:mirbase
Length = 68
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 12 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 63
Query: 72 cctgg 76
|||||
Sbjct: 64 cctgg 68
>27010_eca-mir-125a:mirbase
Length = 68
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 12 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 63
Query: 72 cctgg 76
|||||
Sbjct: 64 cctgg 68
>33970_ssc-mir-125a:mirbase
Length = 80
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 69
Query: 73 ctgg 76
||||
Sbjct: 70 ctgg 73
>32720_rno-mir-125a:mirbase
Length = 85
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 7 ctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 66
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
Query: 67 gggagcctgg 76
||||||||||
Sbjct: 68 gggagcctgg 77
>32721_rno-mir-125a:mirbase
Length = 85
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 7 ctctaggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 66
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
Query: 67 gggagcctgg 76
||||||||||
Sbjct: 68 gggagcctgg 77
>31841_mmu-mir-125a:mirbase
Length = 68
Score = 121 bits (61), Expect = 8e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 12 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 71
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 ggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggag 63
Query: 72 cctgg 76
|||||
Sbjct: 64 cctgg 68
>31842_mmu-mir-125a:mirbase
Length = 68
Score = 121 bits (61), Expect = 8e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 12 ggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggag 71
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4 ggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggag 63
Query: 72 cctgg 76
|||||
Sbjct: 64 cctgg 68
>33201_bta-mir-125a:mirbase
Length = 86
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 72
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
Query: 73 ctggtgtctggcc 85
|||| ||| ||||
Sbjct: 74 ctggcgtccggcc 86
>26689_cfa-mir-125a:mirbase
Length = 60
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 14 tccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagcc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagcc 60
>34278_dre-mir-125a-2:mirbase
Length = 107
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 70
||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||||||
Sbjct: 28 gtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttggga 84
>34588_fru-mir-125a:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 6e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 70
||||||||||||||| ||||||||| || || | ||||||||||||||| |||||||
Sbjct: 8 gtccctgagaccctt-aacctgtgatgatatgaaaggtcacaggtgaggtccttggga 64
>34277_dre-mir-125a-1:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 62
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
>34735_tni-mir-125a:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 2e-05
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 70
||||||||||||||| ||||||||| || | | ||||||||||||||| |||||||
Sbjct: 5 gtccctgagaccctt-aacctgtgataacgtgaaaggtcacaggtgaggtccttggga 61
>25764_xtr-mir-125a:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 2e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 13 gtccctgagaccctttaacctgtgagga 40
||||||||||||| ||||||||||||||
Sbjct: 1 gtccctgagaccc-ttaacctgtgagga 27
