miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28434_hsa-mir-126:mirbase
Length = 85
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 61
Query: 61 agtaataatgcgccgtccacggca 84
||||||||||||||||||||||||
Sbjct: 62 agtaataatgcgccgtccacggca 85
>30821_ppy-mir-126:mirbase
Length = 81
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 61
Query: 61 agtaataatgcgccgtccac 80
||||||||||||||||||||
Sbjct: 62 agtaataatgcgccgtccac 81
>27013_eca-mir-126:mirbase
Length = 73
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 6 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 66 taatgcgccgtc 77
||||||||||||
Sbjct: 61 taatgcgccgtc 72
>27014_eca-mir-126:mirbase
Length = 73
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 6 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 66 taatgcgccgtc 77
||||||||||||
Sbjct: 61 taatgcgccgtc 72
>27721_mml-mir-126:mirbase
Length = 85
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gctggtgatgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 61
Query: 61 agtaataatgcgccgtccac 80
||||||||||||| ||||||
Sbjct: 62 agtaataatgcgctgtccac 81
>33973_ssc-mir-126:mirbase
Length = 73
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 6 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 66 taatgcgc 73
||||||||
Sbjct: 61 taatgcgc 68
>33204_bta-mir-126:mirbase
Length = 73
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 7 gacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaat 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaat 61
Query: 67 aatgcgc 73
|||||||
Sbjct: 62 aatgcgc 68
>25944_gga-mir-126:mirbase
Length = 84
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
Query: 61 agtaataatgcgc 73
|||||||||||||
Sbjct: 61 agtaataatgcgc 73
>26455_tgu-mir-126:mirbase
Length = 132
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 gctggcgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 60
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gctggtgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtg 110
Query: 61 agtaataatgcgc 73
|||||||||||||
Sbjct: 111 agtaataatgcgc 123
>31847_mmu-mir-126:mirbase
Length = 73
Score = 121 bits (61), Expect = 8e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 13 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
Query: 73 c 73
|
Sbjct: 68 c 68
>31848_mmu-mir-126:mirbase
Length = 73
Score = 121 bits (61), Expect = 8e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 13 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
Query: 73 c 73
|
Sbjct: 68 c 68
>32725_rno-mir-126:mirbase
Length = 73
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 13 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
>33060_rno-mir-3567:mirbase
Length = 118
Score = 119 bits (60), Expect = 3e-28
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 13 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 acattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 28
>26692_cfa-mir-126:mirbase
Length = 59
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 59
>27377_mdo-mir-126:mirbase
Length = 69
Score = 113 bits (57), Expect = 2e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5 cattattacttttggtacgcgctgtgacacatcaaactcgtaccgtgagtaataatgcgc 64
Query: 74 c 74
|
Sbjct: 65 c 65
>31481_oan-mir-126:mirbase
Length = 110
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 29 cattattacttttggtacgcgctgtgacgcttcaaactcgtaccgtgagtaataatgcg 87
>25767_xtr-mir-126:mirbase
Length = 69
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 8 cattattacttttggtacgcgctgtgtcacatcaaactcgtaccgtgagtaataatgcgc 67
>34590_fru-mir-126:mirbase
Length = 63
Score = 75.8 bits (38), Expect = 4e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 71
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
>34737_tni-mir-126:mirbase
Length = 63
Score = 75.8 bits (38), Expect = 4e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 71
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
>34284_dre-mir-126b:mirbase
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaata 67
||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct: 23 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaata 76
>34283_dre-mir-126a:mirbase
Length = 101
Score = 61.9 bits (31), Expect = 7e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacact-tcaaactcgtaccgtgagtaataatgc 71
||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 26 cattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgc 84
>24832_cin-mir-126:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ctcgtaccgtgagtaataa 68
|||||||||||||||||||
Sbjct: 49 ctcgtaccgtgagtaataa 67
>25326_csa-mir-126:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ctcgtaccgtgagtaataa 68
|||||||||||||||||||
Sbjct: 65 ctcgtaccgtgagtaataa 83
>25475_pma-mir-126:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ctcgtaccgtgagtaataa 68
|||||||||||||||||||
Sbjct: 44 ctcgtaccgtgagtaataa 62
