miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 117 bits (59), Expect = 2e-26
Identities = 66/67 (98%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcc 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcccttcgcgaatctttt-gcggtctgggcttgctgtacataactcaatagccggaagcc 60
Query: 61 cttaccc 67
|||||||
Sbjct: 61 cttaccc 67
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 117 bits (59), Expect = 2e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 4 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 62
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 64
Query: 63 taccccaaaaagcatttgcggagggcg 89
|||||||||||||||| ||||||||||
Sbjct: 65 taccccaaaaagcattcgcggagggcg 91
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 99.6 bits (50), Expect = 6e-21
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 5 ttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagc-cggaagccctt 63
||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||
Sbjct: 6 ttcgcgaatctttttgcggtctgggcttgctgttcataagtatctagctgggaagccctt 65
Query: 64 accccaaaaagcatttgcggagggcg 89
||||||||||||||||||||| ||||
Sbjct: 66 accccaaaaagcatttgcggaaggcg 91
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
(zebrafish)
Length = 89
Score = 83.8 bits (42), Expect = 3e-16
Identities = 74/83 (89%), Gaps = 5/83 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttacc 66
||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttacc 66
Query: 67 ccaaaaagcatttgcggagggcg 89
|||||||||||||||||||||||
Sbjct: 67 ccaaaaagcatttgcggagggcg 89
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 54 ggaagcccttaccccaaaaagcatttgcggagggcg 89
||||||||||||||||||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaagcatttgcggagggcg 91
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 3 ccttcgcgaatctttttgcggtctgggcttgctgt 37
||||| |||||||||||||||||||||||||||||
Sbjct: 4 ccttcacgaatctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccc 68
||||||||||||||||||||||||||||| |||| | | | |||||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgtgcatacacgact--ctggaagcccttacccc 67
Query: 69 aaaaagcatt 78
||||||||||
Sbjct: 68 aaaaagcatt 77
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 71
||||||||||||||||||||||||| | ||| | ||||| ||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttcctaaggaagtagccaggaagcccttaccccaaa 73
Query: 72 aag 74
|||
Sbjct: 74 aag 76
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 63/72 (87%), Gaps = 5/72 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgtacataactcaatagcc--ggaagcccttacc 66
||||||||||||||||||||||||||||| ||| ||| || | |||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgtgcat---tcattaatctgggaagcccttacc 66
Query: 67 ccaaaaagcatt 78
||||||||||||
Sbjct: 67 ccaaaaagcatt 78
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctg-tacataactcaatag-ccggaagcccttacccca 69
||||||||||||||||||||||||| | | ||| ||| ||| | ||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacccca 72
Query: 70 aaaag 74
|||||
Sbjct: 73 aaaag 77
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 54 ggaagcccttaccccaaaaagcatttgcggagg 86
||||||||||||||||||||||||||| |||||
Sbjct: 58 ggaagcccttaccccaaaaagcatttgtggagg 90
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/66 (87%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 71
||||||||||||||||||||||||| || | |||| || ||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt---caagttaatatccaggaagcccttaccccaaa 70
Query: 72 aagcat 77
||||||
Sbjct: 71 aagcat 76
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gaatctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgt 38
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 ggaagcccttaccccaaaaagcatttgcg 82
||||||||||||||||||||| |||||||
Sbjct: 57 ggaagcccttaccccaaaaagtatttgcg 85
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 78 atctttttgcggtctgggcttgctgt 53
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 11 atctttttgcggtctgggcttgctgt 36
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 ggaagcccttaccccaaaaagcatttgcgg 83
||||||||||||||||||||| || |||||
Sbjct: 55 ggaagcccttaccccaaaaagtatctgcgg 84
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 ggaagcccttaccccaaaaagcatttgcg 82
||||||||||||||||||||| |||||||
Sbjct: 57 ggaagcccttaccccaaaaagtatttgcg 85
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 69
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 72
Query: 70 aaaag 74
|||||
Sbjct: 73 aaaag 77
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgta 38
||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgta 39
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 ggaagcccttaccccaaaaagcat 77
||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcat 76
>RF00486;mir-129;AAWZ01021483.1/628-534 28377:Anolis carolinensis
(green anole)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 aagcccttaccccaaaaagcat 77
||||||||||||||||||||||
Sbjct: 62 aagcccttaccccaaaaagcat 83
