miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30828_ppy-mir-130b:mirbase
Length = 82
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 gcctgcccgacactctttccctgttgcactactatgggccgctgggaagcagtgcaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcctgcccgacactctttccctgttgcactactatgggccgctgggaagcagtgcaatga 61
Query: 61 tgaaagggcatcggtcaggtc 81
|||||||||||||||||||||
Sbjct: 62 tgaaagggcatcggtcaggtc 82
>28443_hsa-mir-130b:mirbase
Length = 82
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 gcctgcccgacactctttccctgttgcactactatgggccgctgggaagcagtgcaatga 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2 gcctgcccgacactctttccctgttgcactactataggccgctgggaagcagtgcaatga 61
Query: 61 tgaaagggcatcggtcaggtc 81
|||||||||||||||||||||
Sbjct: 62 tgaaagggcatcggtcaggtc 82
>27729_mml-mir-130b:mirbase
Length = 82
Score = 145 bits (73), Expect = 5e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 1 gcctgcccgacactctttccctgttgcactactatgggccgctgggaagcagtgcaatga 60
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 2 gcctgcccgacactctttccctgttgcactactgtgggccactgggaagcagtgcaatga 61
Query: 61 tgaaagggcatcggtcaggtc 81
|||||||||||||||||||||
Sbjct: 62 tgaaagggcatcggtcaggtc 82
>33980_ssc-mir-130b:mirbase
Length = 80
Score = 125 bits (63), Expect = 5e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 1 gcctgcccgacactctttccctgttgcactactatgggccgctgggaagcagtgcaatga 60
||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 1 gcctgcctgacactctttccctgttgcactactgtgggccactgggaagcagtgcaatga 60
Query: 61 tgaaagggcatcggtcagg 79
|||||||||||| ||||||
Sbjct: 61 tgaaagggcatcagtcagg 79
>27023_eca-mir-130b:mirbase
Length = 81
Score = 117 bits (59), Expect = 1e-27
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gcctgcccgacactctttccctgttgcactactatgggccgctgggaagcagtgcaatga 60
||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 2 gcctgcctgacactctttccctgttgcactactgtgggctgctgg-aagcagtgcaatga 60
Query: 61 tgaaagggcatcggtcagg 79
|||||||||||||||||||
Sbjct: 61 tgaaagggcatcggtcagg 79
>32732_rno-mir-130b:mirbase
Length = 82
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 9 gacactctttccctgttgcactactatgggccgctgggaagcagtgcaatgatgaaaggg 68
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
Query: 69 catcggtcagg 79
|||| ||||||
Sbjct: 70 catccgtcagg 80
>33212_bta-mir-130b:mirbase
Length = 82
Score = 117 bits (59), Expect = 1e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 1 gcctgcccgacactctttccctgttgcactactatgggccgctgggaagcagtgcaatga 60
||||||| ||||||||||||||||||||||||| || ||| |||| ||||||||||||||
Sbjct: 2 gcctgcctgacactctttccctgttgcactactgtgcgcccctggcaagcagtgcaatga 61
Query: 61 tgaaagggcatcggtcagg 79
|||||||||||||||||||
Sbjct: 62 tgaaagggcatcggtcagg 80
>26699_cfa-mir-130b:mirbase
Length = 60
Score = 111 bits (56), Expect = 8e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 12 actctttccctgttgcactactatgggccgctgggaagcagtgcaatgatgaaagggcat 71
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 actctttccctgttgcactactgtgggccgctgggaagcagtgcaatgatgaaagggcat 60
>31857_mmu-mir-130b:mirbase
Length = 82
Score = 111 bits (56), Expect = 8e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 9 gacactctttccctgttgcactactatgggccgctgggaagcagtgcaatgatgaaaggg 68
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 10 gacactctttccctgttgcactactgtgggcctctgggaagcagtgcaatgatgaaaggg 69
Query: 69 catc 72
||||
Sbjct: 70 catc 73
>34291_dre-mir-130b:mirbase
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 4 tgcccgacactctttccctgttgcactactatgg--gccgctgggaagcagtgcaatgat 61
|||| ||||||||||||||||||||||||| ||| || || | |||||||||||| ||
Sbjct: 5 tgcctgacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataat 64
Query: 62 gaaagggcatc 72
|||||||||||
Sbjct: 65 gaaagggcatc 75
>25773_xtr-mir-130b:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 aagcagtgcaatgatgaaagggcatc 72
||||||||||||||||||||||||||
Sbjct: 45 aagcagtgcaatgatgaaagggcatc 70
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gacactctttccctgttgcactact 33
|||||||||||||||||||||||||
Sbjct: 7 gacactctttccctgttgcactact 31
>25948_gga-mir-130b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 ctctttccctgttgcactact 33
|||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactact 34
>26460_tgu-mir-130b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 ctctttccctgttgcactact 33
|||||||||||||||||||||
Sbjct: 63 ctctttccctgttgcactact 83
>31487_oan-mir-130c:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgatgaaagggcatcgg 74
|||||||||||| | ||||||||||||
Sbjct: 51 agcagtgcaatggtaaaagggcatcgg 77
>32731_rno-mir-130a:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgatgaaagggcatcgg 74
|||||||||||| | ||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcatcgg 79
>33089_rno-mir-3590:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 48 agcagtgcaatgatgaaagggcatcgg 74
|||||||||||| | ||||||||||||
Sbjct: 29 agcagtgcaatgttaaaagggcatcgg 3
>33090_rno-mir-3590:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 48 agcagtgcaatgatgaaagggcatcgg 74
|||||||||||| | ||||||||||||
Sbjct: 29 agcagtgcaatgttaaaagggcatcgg 3
