miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00703;mir-139;ABRQ01007008.1/2766-2833 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 gtgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgtt 60
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gtgtactctacagtgcacgtgtctccagtgtggctcagaggctggagacgcggccctgtt 60
Query: 61 ggagtaa 67
|||||||
Sbjct: 61 ggagtaa 67
>RF00703;mir-139;ABQF01042738.1/622-689 59729:Taeniopygia guttata
Length = 68
Score = 60.0 bits (30), Expect = 3e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcacgtgtctccagtgtggctcggaggctggagacgcggccctgttg 61
|||||||||||||||| |||||||||||||| | | | ||||||| ||||||||||||
Sbjct: 2 tgtattctacagtgcatgtgtctccagtgtgagtaagtgactggagatgcggccctgttg 61
Query: 62 ga 63
||
Sbjct: 62 ga 63
>RF00703;mir-139;AAWZ01039822.1/26175-26108 28377:Anolis
carolinensis (green anole)
Length = 68
Score = 52.0 bits (26), Expect = 8e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcacgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcatgtgtctccagtgt 31
>RF00703;mir-139;CAAK05025129.1/176-108 7955:Danio rerio
(zebrafish)
Length = 69
Score = 52.0 bits (26), Expect = 8e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcacgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcatgtgtctccagtgt 31
>RF00703;mir-139;BAAE01265569.1/1354-1284 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcacgtgtctccagt 29
|||||||||||||||| |||||||||||
Sbjct: 2 tgtattctacagtgcatgtgtctccagt 29
