miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00678;mir-140;ABRO01131757.1/4897-4800 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 98
Score = 163 bits (82), Expect = 5e-40
Identities = 91/94 (96%)
Strand = Plus / Plus
Query: 3 tgtctctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttct 62
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tgtctctctctgtgtcctcacagtggttttaccctatggtaggttacatcatgctgttct 60
Query: 63 accacagggtagaaccacggacaggataccgggg 96
||||||||||||||||||||||||||||||||||
Sbjct: 61 accacagggtagaaccacggacaggataccgggg 94
>RF00678;mir-140;AADN02054178.1/9586-9683 9031:Gallus gallus
(chicken)
Length = 98
Score = 157 bits (79), Expect = 3e-38
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 7 tctctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctacca 66
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tctctccgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctacca 64
Query: 67 cagggtagaaccacggacaggataccggggc 97
|||||||||||||||||| |||| |||||||
Sbjct: 65 cagggtagaaccacggacgggatgccggggc 95
>RF00678;mir-140;AAVX01038725.1/2937-3034 7868:Callorhinchus milii
(ghost shark)
Length = 98
Score = 139 bits (70), Expect = 8e-33
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 10 ctctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacag 69
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctctgtgacctaccagtggttttaccctatggtaggttacgtcatgctgttctaccacag 67
Query: 70 ggtagaaccacggacagg 87
||||||||||||||||||
Sbjct: 68 ggtagaaccacggacagg 85
>RF00678;mir-140;BAAF04008549.1/880-978 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 109 bits (55), Expect = 7e-24
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 22 cagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacgg 81
Query: 83 acaggat 89
|| ||||
Sbjct: 82 acgggat 88
