miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28308_ggo-mir-141:mirbase
Length = 95
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 61
Query: 61 cactgtctggtaaagatggcccccgggtgggttc 94
||||||||||||||||||||||||||||||||||
Sbjct: 62 cactgtctggtaaagatggcccccgggtgggttc 95
>30233_ptr-mir-141-2:mirbase
Length = 94
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 60
Query: 61 cactgtctggtaaagatggcccccgggtgggttc 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 cactgtctggtaaagatggcccccgggtgggttc 94
>28460_hsa-mir-141:mirbase
Length = 95
Score = 178 bits (90), Expect = 5e-46
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 1 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 61
Query: 61 cactgtctggtaaagatggcccccgggtgggttc 94
|||||||||||||||||||| |||||||||||||
Sbjct: 62 cactgtctggtaaagatggctcccgggtgggttc 95
>30844_ppy-mir-141:mirbase
Length = 95
Score = 178 bits (90), Expect = 5e-46
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 1 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggccggccctgggttcatcttccagtacagtgttggatggtctaattgtgaagctcctaa 61
Query: 61 cactgtctggtaaagatggcccccgggtgggttc 94
||||||||||||||||||||||||||||||||||
Sbjct: 62 cactgtctggtaaagatggcccccgggtgggttc 95
>27745_mml-mir-141:mirbase
Length = 95
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 61
Query: 61 cactgtctggtaaagatggcccccgggtgggtt 93
|||||||||||||||||||||||||||| ||||
Sbjct: 62 cactgtctggtaaagatggcccccgggtcggtt 94
>30097_ppa-mir-141:mirbase
Length = 95
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaa 61
Query: 61 cactgtctggtaaagatggcccccgggtgggttc 94
|||||||||||||||||| |||| ||||||||||
Sbjct: 62 cactgtctggtaaagatgcccccggggtgggttc 95
>27040_eca-mir-141:mirbase
Length = 72
Score = 143 bits (72), Expect = 3e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 11 gggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaacactgtctgg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaacactgtctgg 60
Query: 71 taaagatggccc 82
||||||||||||
Sbjct: 61 taaagatggccc 72
>33227_bta-mir-141:mirbase
Length = 90
Score = 143 bits (72), Expect = 3e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 3 ccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaaca 62
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 3 ccggctctgggtccatcttccagcacagtgttggatggtctaatggtgaagctcctaaca 62
Query: 63 ctgtctggtaaagatggcccccgg 86
||||||||||||||||||||||||
Sbjct: 63 ctgtctggtaaagatggcccccgg 86
>26715_cfa-mir-141:mirbase
Length = 86
Score = 131 bits (66), Expect = 1e-31
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 2 gccggccctgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaac 61
|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 gccggctctgggtccatcttccagtacagtgttggatggtctagtcacgaagctcctaac 60
Query: 62 actgtctggtaaagatggcccccggg 87
||||||||||||||||||||||||||
Sbjct: 61 actgtctggtaaagatggcccccggg 86
>31873_mmu-mir-141:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 gggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaacactgtctgg 70
|||||||||||||||| |||||||||||||| || | ||||||||||||||||||||||
Sbjct: 1 gggtccatcttccagtgcagtgttggatggttgaagtatgaagctcctaacactgtctgg 60
Query: 71 taaagatggccc 82
||||||||||||
Sbjct: 61 taaagatggccc 72
>32746_rno-mir-141:mirbase
Length = 94
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 13 gtccatcttccagtacagtgttggatggtctaattgtgaagctcctaacactgtctggta 72
|||||||||||||| |||||||||||||| || | |||||||||||||||||||||||
Sbjct: 13 gtccatcttccagtgcagtgttggatggttgaagtacgaagctcctaacactgtctggta 72
Query: 73 aagatggcccccgggt 88
||||||||||||||||
Sbjct: 73 aagatggcccccgggt 88
>27389_mdo-mir-141:mirbase
Length = 64
Score = 56.0 bits (28), Expect = 5e-09
Identities = 58/69 (84%), Gaps = 8/69 (11%)
Strand = Plus / Plus
Query: 10 tgggtccatcttccagtacagtgttggatggtctaattgtgaagctcctaacactgtctg 69
|||| |||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 1 tggggccatcttccagtacagtggtggatggt--------gaagcttctaacactgtctg 52
Query: 70 gtaaagatg 78
|||||||||
Sbjct: 53 gtaaagatg 61
>24837_cin-mir-141:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ctaacactgtctggtaaagatg 78
||||||||||||||||||||||
Sbjct: 39 ctaacactgtctggtaaagatg 60
>25328_csa-mir-141:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 ctaacactgtctggtaaagatg 78
||||||||||||||||||||||
Sbjct: 47 ctaacactgtctggtaaagatg 68
