miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgttt 70
Query: 62 cctactttatggatgagtgtactgt 86
|||||||||||||||||||||||||
Sbjct: 71 cctactttatggatgagtgtactgt 95
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gacagtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtt 69
Query: 61 tcctactttatggatga 77
|||||||||||||||||
Sbjct: 70 tcctactttatggatga 86
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 149 bits (75), Expect = 7e-36
Identities = 85/87 (97%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 10 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 69
Query: 60 ttcctactttatggatgagtgtactgt 86
|||||||||||||||||||||||||||
Sbjct: 70 ttcctactttatggatgagtgtactgt 96
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 83.8 bits (42), Expect = 3e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 11 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 70
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 83.8 bits (42), Expect = 3e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 11 acagtgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgtagtgtt 70
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 10 gtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgtttcctactt 68
||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78
Query: 69 tatggatgagt 79
|||||||||||
Sbjct: 79 tatggatgagt 89
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||||||||||||
Sbjct: 62 gtgtagtgtttcctactttatggatgagtgtactgt 97
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 69.9 bits (35), Expect = 5e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaac 39
||||||||||||| |||||||||||||||||||||||||
Sbjct: 10 gacagtgcagtcatccataaagtagaaagcactactaac 48
