miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 147 bits (74), Expect = 3e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 3 gggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtataga 62
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3 gggccctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtataga 62
Query: 63 tgatgtactagtccgggcaccc 84
||||||||||||||||| ||||
Sbjct: 63 tgatgtactagtccgggtaccc 84
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 2 ggggccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatag 61
||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 2 ggggcccaggccgggatatcatcgtatactgtaagtttgcaatgagacactacagtatag 61
Query: 62 atgatgtact 71
||||||||||
Sbjct: 62 atgatgtact 71
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 101 bits (51), Expect = 1e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 5 gccctggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatg 64
|||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 5 gccctggccaggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatg 64
Query: 65 atgtact 71
|||||||
Sbjct: 65 atgtact 71
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 89.7 bits (45), Expect = 5e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 71
|||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 89.7 bits (45), Expect = 5e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 71
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgat-gagacactacagtatagatgatgtacta 72
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtacta 73
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgat-gagacactacagtatagatgatgtacta 72
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgtacta 73
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgcgatg-agacactacagtatagatgatgtacta 72
||||||||||||||| |||||||| | || |||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatattgtaagttcacaattcagacactacagtatagatgatgtacta 73
