miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27752_mml-mir-146b:mirbase
Length = 73
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 61
Query: 61 tctggtgcccgg 72
||||||||||||
Sbjct: 62 tctggtgcccgg 73
>27753_mml-mir-146b:mirbase
Length = 73
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 61
Query: 61 tctggtgcccgg 72
||||||||||||
Sbjct: 62 tctggtgcccgg 73
>28467_hsa-mir-146b:mirbase
Length = 73
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 61
Query: 61 tctggtgcccgg 72
||||||||||||
Sbjct: 62 tctggtgcccgg 73
>28468_hsa-mir-146b:mirbase
Length = 73
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 61
Query: 61 tctggtgcccgg 72
||||||||||||
Sbjct: 62 tctggtgcccgg 73
>30851_ppy-mir-146b:mirbase
Length = 74
Score = 129 bits (65), Expect = 3e-31
Identities = 72/73 (98%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 ctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactcag 61
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 62 ttctggtgcccgg 74
>30852_ppy-mir-146b:mirbase
Length = 74
Score = 129 bits (65), Expect = 3e-31
Identities = 72/73 (98%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 ctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactcag 61
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 62 ttctggtgcccgg 74
>33233_bta-mir-146b:mirbase
Length = 106
Score = 105 bits (53), Expect = 4e-24
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 19 ctggctctgagaactgaattccataggctgtgagctctagcaaatgccctagggactcag 78
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 79 ttctggtgcccgg 91
>27048_eca-mir-146b:mirbase
Length = 74
Score = 97.6 bits (49), Expect = 1e-21
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct: 2 ctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactcag 61
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 62 ttctggtgcccgg 74
>27047_eca-mir-146b:mirbase
Length = 74
Score = 97.6 bits (49), Expect = 1e-21
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct: 2 ctggctctgagaactgaattccataggctgtgagctccagcaaatgccctagggactcag 61
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 62 ttctggtgcccgg 74
>31880_mmu-mir-146b:mirbase
Length = 109
Score = 97.6 bits (49), Expect = 1e-21
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagca-atgccctgtggactcag 59
||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct: 22 ctggctctgagaactgaattccataggctgtgagctctagcagacgccctagggactcag 81
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 82 ttctggtgcccgg 94
>33997_ssc-mir-146b:mirbase
Length = 99
Score = 97.6 bits (49), Expect = 1e-21
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct: 14 ctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactcag 73
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 74 ttctggtgcccgg 86
>32753_rno-mir-146b:mirbase
Length = 88
Score = 91.7 bits (46), Expect = 6e-20
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagca-atgccctgtggactcag 59
||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 8 ctggccctgagaactgaattccataggctgtgaactctagcagatgccctagggactcag 67
Query: 60 ttctggtgcc 69
||||||||||
Sbjct: 68 ttctggtgcc 77
>27395_mdo-mir-146b:mirbase
Length = 68
Score = 65.9 bits (33), Expect = 3e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctc 37
||||| |||||||||||||||||||||||||||||||
Sbjct: 1 ctggctctgagaactgaattccataggctgtgagctc 37
>26721_cfa-mir-146b:mirbase
Length = 61
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 8 tgagaactgaattccataggctgtgagct 36
|||||||||||||||||||||||||||||
Sbjct: 1 tgagaactgaattccataggctgtgagct 29
>31504_oan-mir-146b:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 8e-10
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 2 tggcactgagaactgaattccataggctgtgag 34
|||| ||||||||||||||||||||||||||||
Sbjct: 19 tggctctgagaactgaattccataggctgtgag 51
>25497_pma-mir-146:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tgagaactgaattccataggctgtga 33
||||||||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggctgtga 34
>26476_tgu-mir-146b:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tggcactgagaactgaattccataggc 28
|||| ||||||||||||||||||||||
Sbjct: 5 tggctctgagaactgaattccataggc 31
>25966_gga-mir-146b:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgagaactgaattccataggc 28
|||||||||||||||||||||
Sbjct: 19 tgagaactgaattccataggc 39
>33232_bta-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 tgagaactgaattccataggctgtg 32
|||||||||||||||||||| ||||
Sbjct: 21 tgagaactgaattccataggttgtg 45
>25795_xtr-mir-146:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 tgagaactgaattccatagg 27
||||||||||||||||||||
Sbjct: 18 tgagaactgaattccatagg 37
>34318_dre-mir-146a:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 ctgagaactgaattccatag 26
||||||||||||||||||||
Sbjct: 24 ctgagaactgaattccatag 43
