miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;ABBA01063157.1/877-789 9606:Homo sapiens (human)
Length = 89
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ctggcactgagaactgaattccataggctgtgagctctagcaatgccctgtggactcagt 68
Query: 61 tctggtgcccgg 72
||||||||||||
Sbjct: 69 tctggtgcccgg 80
>RF00691;mir-146;ABRQ01378994.1/1874-1963 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 97.6 bits (49), Expect = 2e-20
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct: 9 ctggccctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactcag 68
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 69 ttctggtgcccgg 81
>RF00691;mir-146;ABDC01238493.1/6154-6243 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 91.7 bits (46), Expect = 1e-18
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctag-caatgccctgtggactcag 59
||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 9 ctggctctgagaactgaattccataggctgtgagctctagtgaatgccctagggactcag 68
Query: 60 ttctggtgcc 69
||||||||||
Sbjct: 69 ttctggtgcc 78
>RF00691;mir-146;AAIY01333564.1/1864-1775 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 90
Score = 89.7 bits (45), Expect = 4e-18
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct: 9 ctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggagctcag 68
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 69 ttctggtgcccgg 81
>RF00691;mir-146;AAGU02025916.1/485-574 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 89.7 bits (45), Expect = 4e-18
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagca-atgccctgtggactcag 59
||||| ||||||||||||||||||||||||||| |||||||| ||||||| | ||||||
Sbjct: 9 ctggctctgagaactgaattccataggctgtgaactctagcagatgccctaggaactcag 68
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 69 ttctggtgcccgg 81
>RF00691;mir-146;AAYZ01153033.1/3261-3350 9978:Ochotona princeps
(American pika)
Length = 90
Score = 75.8 bits (38), Expect = 6e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagca-atgccctgtggactcag 59
||||| ||||||||||||||| |||||| ||||||||||||| || |||| ||||||||
Sbjct: 9 ctggctctgagaactgaattctataggccgtgagctctagcagataccctagggactcag 68
Query: 60 ttctggtgcc 69
||||||||||
Sbjct: 69 ttctggtgcc 78
>RF00691;mir-146;AANG01052378.1/2905-2994 9685:Felis catus
(domestic cat)
Length = 90
Score = 73.8 bits (37), Expect = 3e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||| ||||||||||||||||||||||||| ||||| ||| |||| ||| ||||||||
Sbjct: 9 ctggctctgagaactgaattccataggctgtaagctcaagcaaatggcctagggactcag 68
Query: 60 ttctggtgc 68
|||||||||
Sbjct: 69 ttctggtgc 77
>RF00691;mir-146;ABRO01069912.1/224-312 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 73.8 bits (37), Expect = 3e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagcaatgccct 49
||||| |||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 9 ctggctctgagaactgaattccataggccgtgagctttagcaatgccct 57
>RF00691;mir-146;AAFR03025019.1/59830-59741 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 65.9 bits (33), Expect = 6e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctc 37
||||| |||||||||||||||||||||||||||||||
Sbjct: 9 ctggctctgagaactgaattccataggctgtgagctc 45
>RF00691;mir-146;AAEX02015545.1/16918-16829 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 65.9 bits (33), Expect = 6e-11
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 ctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactcag 59
||||| |||||||||||||||||||||||||||||| ||| || ||| ||||||||
Sbjct: 9 ctggctctgagaactgaattccataggctgtgagcttgagcaaacagcctagggactcag 68
Query: 60 ttctggtgcccgg 72
|||||||||||||
Sbjct: 69 ttctggtgcccgg 81
>RF00691;mir-146;AAPN01141106.1/3079-3169 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 2 tggcactgagaactgaattccataggctgtgag 34
|||| ||||||||||||||||||||||||||||
Sbjct: 11 tggctctgagaactgaattccataggctgtgag 43
>RF00691;mir-146;ABRQ01105150.1/1426-1514 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 7 ctgagaactgaattccataggctgtgagctctagca-atgccctgtggactcagttctgg 65
||||||||||||| |||||||| |||||| |||||| || |||| | ||||||||||||
Sbjct: 14 ctgagaactgaatgccataggcagtgagcgctagcagataccctaggaactcagttctgg 73
Query: 66 tgccc 70
|||||
Sbjct: 74 tgccc 78
>RF00691;mir-146;AAKN02016522.1/10507-10417 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 10 agaactgaattccataggctgtgagctctagc-aatgccctgtggactcagttctgg 65
|||||||||||| |||||||||||||| ||| |||||| | ||||||||||||||
Sbjct: 18 agaactgaattctgtaggctgtgagctccagcaaatgccttagggactcagttctgg 74
>RF00691;mir-146;AAWZ01011696.1/200150-200239 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ctgagaactgaattccataggct 29
|||||||||||||||||||||||
Sbjct: 15 ctgagaactgaattccataggct 37
>RF00691;mir-146;ABQF01027036.1/15002-14913 59729:Taeniopygia
guttata
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tggcactgagaactgaattccataggc 28
|||| ||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AADN02030809.1/7252-7342 9031:Gallus gallus
(chicken)
Length = 91
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tgagaactgaattccataggc 28
|||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggc 36
