miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 91.7 bits (46), Expect = 1e-18
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 4 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 63
||||||||||||||| |||||||||||||||||| |||| | |||||||||||| |||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggata-cagtgtgcggaagtgctt 59
Query: 64 ctgctacatt 73
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 75.8 bits (38), Expect = 7e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 4 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 63
||||||||||||||| ||||||||||||| |||| | || ||||||||| |||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgatt-ttgatgccagtgtgcagaaatgctt 59
Query: 64 ctgctacatt 73
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
Length = 70
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 11 tggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgctac 70
|||||||||||||||||||||| |||| |||| |||| ||||| |||||||| ||||||
Sbjct: 8 tggaaacatttctgcacaaactcgattatggataccaatgtgccaaaatgcttttgctac 67
Query: 71 att 73
|||
Sbjct: 68 att 70
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 4 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 63
||||||||||||||||||| ||||| ||| |||| ||| |||||||||||| |||||
Sbjct: 1 aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60
Query: 64 ctgctacatt 73
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 4 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 63
|||||||||||| || ||||||||||||| || | || | ||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 64 ctgctacatt 73
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AANG01714059.1/489-419 9685:Felis catus (domestic
cat)
Length = 71
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 14 aaacatttctgcacaaactagattctggacaccagtgtgc 53
|||||||||||||||||||||||| |||| ||||||||||
Sbjct: 11 aaacatttctgcacaaactagattatggataccagtgtgc 50
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 20 ttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgctacatt 73
||||||||||||| || | |||| | |||||||| |||||||||||||||||||
Sbjct: 17 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 4 aatctagtggaaacatttctgcacaaactagat 36
||||||||||||||||||||||||| |||||||
Sbjct: 1 aatctagtggaaacatttctgcacagactagat 33
>RF00693;mir-147;ABRN01165333.1/9979-9911 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 17 catttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgcta 69
|||||||||| | || ||||| |||| ||||||||| ||||||||||||||||
Sbjct: 13 catttctgcatagacaagattatggaaaccagtgtgtggaaatgcttctgcta 65
>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 37 tctggacaccagtgtgcggaaatgcttctgcta 69
||||||||||||||||||||| |||||||||||
Sbjct: 34 tctggacaccagtgtgcggaagtgcttctgcta 66
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 56.0 bits (28), Expect = 7e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 10 gtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgcta 69
||||||||||||||||||| |||| | | || |||||||||| ||| |||||||||||
Sbjct: 7 gtggaaacatttctgcacacactatactactgaaaccagtgtgcagaagtgcttctgcta 66
Query: 70 catt 73
||||
Sbjct: 67 catt 70
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 5 atctagtggaaacatttctgcacaaactaga 35
||||||||||||||| |||||||||||||||
Sbjct: 2 atctagtggaaacatctctgcacaaactaga 32
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 54.0 bits (27), Expect = 3e-07
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 12 ggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgctaca 71
|||| |||||||||||||||| | | ||||| ||||||||||||||||||||| ||||
Sbjct: 9 ggaatcatttctgcacaaactcggtactggaa--cagtgtgcggaaatgcttctggtaca 66
Query: 72 tt 73
||
Sbjct: 67 tt 68
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 4 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 63
||||||| ||||||| |||||| |||||||| | || |||||||||| ||| |||||
Sbjct: 1 aatctagctgaaacatctctgcataaactagactactgaaaccagtgtgcagaagtgctt 60
Query: 64 ctgctacatt 73
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAPY01498171.1/7435-7366 37347:Tupaia belangeri
(northern tree shrew)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 4 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 63
||||||| | ||| |||||||||||||| ||| | |||| || | |||| ||||||||||
Sbjct: 1 aatctagggaaaagatttctgcacaaaccagactttggaaactaatgtgtggaaatgctt 60
Query: 64 ctgctacatt 73
||||| ||||
Sbjct: 61 ctgctgcatt 70
>RF00693;mir-147;AAWR02026698.1/2322-2389 9796:Equus caballus
(horse)
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 atctagtggaaacatttctgcacaa 29
|||||||||||||||||||||||||
Sbjct: 2 atctagtggaaacatttctgcacaa 26
>RF00693;mir-147;ABRN01368247.1/244-313 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 11 tggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgctac 70
|||||||||||||||||||| |||||| | || |||| ||||| ||||| || ||||||
Sbjct: 8 tggaaacatttctgcacaaagtagattatagataccaatgtgccaaaatgtttttgctac 67
Query: 71 a 71
|
Sbjct: 68 a 68
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 45 ccagtgtgcggaaatgcttctgctacatt 73
|||||||| ||||||||||||||||||||
Sbjct: 44 ccagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 accagtgtgcggaaatgcttctgctaca 71
||||||||| ||||||||||||||||||
Sbjct: 40 accagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;CABD01100245.1/5309-5241 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tctagtggaaacatttctgcacaa 29
||||||||||||||||||||||||
Sbjct: 3 tctagtggaaacatttctgcacaa 26
>RF00693;mir-147;AAKN02005203.1/37099-37168 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 14 aaacatttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgctacatt 73
|||||||||||||||||| ||| | | || |||||||| || ||||||||||||||||
Sbjct: 11 aaacatttctgcacaaaccagactattgaatccagtgtggggcgatgcttctgctacatt 70
>RF00693;mir-147;AAEX02028076.1/21466-21402 9615:Canis lupus
familiaris (dog)
Length = 65
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tggaaacatttctgcacaaacta 33
|||||||||||||||||||||||
Sbjct: 8 tggaaacatttctgcacaaacta 30
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 cagtgtgcggaaatgcttctgct 68
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 cagtgtgcggaaatgcttctgct 68
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 agtgtgcggaaatgcttctgctacat 72
|||||| |||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69
>RF00693;mir-147;AAFC03112932.1/7275-7345 9913:Bos taurus (cattle)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 39 tggacaccagtgtgcggaaatgcttctgctacat 72
|||||||||||||| ||||| | |||||||||||
Sbjct: 37 tggacaccagtgtgtggaaacgattctgctacat 70
>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 44 accagtgtgcggaaatgcttctgctacatt 73
||||||||| ||||||||||||| ||||||
Sbjct: 49 accagtgtgtggaaatgcttctgttacatt 78
>RF00693;mir-147;AANG01591628.1/889-825 9685:Felis catus (domestic
cat)
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ggaaacatttctgcacaaacta 33
||||||||||||||||||||||
Sbjct: 9 ggaaacatttctgcacaaacta 30
>RF00693;mir-147;AAIY01580043.1/888-817 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 24 gcacaaactagattctggacaccagtgtgcggaaatgcttctgctacatt 73
|||||| |||| || |||| |||||||| ||| || ||||||||||||||
Sbjct: 23 gcacaagctaggttatggaaaccagtgttcgggaaggcttctgctacatt 72
