miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;ABRQ01025756.1/6963-6877 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 165 bits (83), Expect = 1e-40
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 10 ttagcatttgaggtgaagttctgttatacactcaggctgtggctctctgaaagtcagtgc 69
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ttagcatttgaggtgaagttctgttatacactcaggctgtggctctgtgaaagtcagtgc 60
Query: 70 atcacagaactttgtctcgaaagcttt 96
|||||||||||||||||||||||||||
Sbjct: 61 atcacagaactttgtctcgaaagcttt 87
>RF00248;mir-148;AAWZ01034152.1/31480-31394 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 109 bits (55), Expect = 7e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 17 ttgaggtgaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacag 76
|||||||||||||||||||||||||| | |||||||| | || |||||||||||||||||
Sbjct: 8 ttgaggtgaagttctgttatacactctgactgtggctatgtggaagtcagtgcatcacag 67
Query: 77 aactttgtctcgaaagctt 95
||||||||||||| |||||
Sbjct: 68 aactttgtctcgagagctt 86
>RF00248;mir-148;AC149872.2/128226-128140 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 91.7 bits (46), Expect = 2e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 16 tttgaggtgaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcaca 75
||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||
Sbjct: 7 tttgaggtgaagttctgttatacactccggctgtgagtaagtggaagtcagtgcatcaca 66
Query: 76 gaactttgtctcga 89
||||||||||||||
Sbjct: 67 gaactttgtctcga 80
>RF00248;mir-148;AAVX01081695.1/240-153 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 69.9 bits (35), Expect = 6e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 23 tgaagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacagaacttt 82
||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 14 tgaagttctgtcatacactcaggctgtagctaa-tggaagtcagtgcatcacagaacttt 72
Query: 83 gtctcga 89
| |||||
Sbjct: 73 gactcga 79
>RF00248;mir-148;AAVX01026781.1/2013-1926 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 58 gaaagtcagtgcatcacagaactttgtct 86
|||||||||||||| ||||||||||||||
Sbjct: 50 gaaagtcagtgcataacagaactttgtct 78
>RF00248;mir-148;AANH01009869.1/35146-35060 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 25 aagttctgttatacactcaggctgtggctctctgaaagtcagtgcatcacagaactttgt 84
||||||||| |||||||| | ||||| ||| || ||||||||||| |||||||||||
Sbjct: 16 aagttctgtgatacactctgactgtgaatctatgctagtcagtgcataacagaactttgc 75
Query: 85 ctcg 88
||||
Sbjct: 76 ctcg 79
>RF00248;mir-148;ABPM01044053.1/712-797 106582:Maylandia zebra
(zebra mbuna)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 61 agtcagtgcatcacagaactttgtctcgaaagct 94
||||||||||| |||||||||||| ||| |||||
Sbjct: 51 agtcagtgcattacagaactttgtttcggaagct 84
