miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00767;mir-150;AC126256.4/165920-166004 10090:Mus musculus
(house mouse)
Length = 85
Score = 105 bits (53), Expect = 9e-23
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 10 gccctgtctcccaacccttgtaccagtgctg-ggctcagaccctggtacaggcctggggg 68
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 10 gccctgtctcccaacccttgtaccagtgctgtgcctcagaccctggtacaggcctggggg 69
Query: 69 acagggacctggg 81
| |||||| ||||
Sbjct: 70 atagggacttggg 82
>RF00767;mir-150;AAKN02046407.1/61619-61703 10141:Cavia porcellus
(domestic guinea pig)
Length = 85
Score = 103 bits (52), Expect = 3e-22
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 9 ggccctgtctcccaacccttgtaccagtgctg-ggctcagaccctggtacaggcctgggg 67
|||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 9 ggccctgtctcccaacccttgtaccagtgctgtgcctcagacgctggtacaggcctgggg 68
Query: 68 gacagggacctgggga 83
| |||||| |||||||
Sbjct: 69 ggcagggaactgggga 84
>RF00767;mir-150;ABRP01053071.1/5653-5737 132908:Pteropus vampyrus
(large flying fox)
Length = 85
Score = 93.7 bits (47), Expect = 3e-19
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 ctccccatggccctgtctcccaacccttgtaccagtgctgggct-cagaccctggtacag 59
||||||| ||||||||||||||||||||||||||||| || ||| | | |||||||||||
Sbjct: 1 ctccccacggccctgtctcccaacccttgtaccagtggtgtgctgcggtccctggtacag 60
Query: 60 gcctgggggacagggacctgggg 82
|| |||||| |||||||||||||
Sbjct: 61 gcatggggggcagggacctgggg 83
>RF00767;mir-150;AAFC03061346.1/17848-17932 9913:Bos taurus
(cattle)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 9 ggccctgtctcccaacccttgtaccagtgctgggctcagaccctggtacagg 60
||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 9 ggccctgtctcccaacccttgtaccagtgtgtgtctcagaccctggtacagg 60
>RF00767;mir-150;AALT01365871.1/7873-7792 42254:Sorex araneus
(European shrew)
Length = 82
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 ggccctgtctcccaacccttgtaccagtgctg 40
||||||||||||||||||||||||||| ||||
Sbjct: 9 ggccctgtctcccaacccttgtaccagcgctg 40
>RF00767;mir-150;AAPY01553607.1/1213-1296 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 15 gtctcccaacccttgtaccagtgctgggctcagaccctggtacaggcctgggggacaggg 74
||||||||||||| ||||||| || |||||||||||||| |||| |||||| |||||
Sbjct: 15 gtctcccaaccctcgtaccagggccatgctcagaccctggtgcagggatggggggcaggg 74
Query: 75 acctgggga 83
| ||||||
Sbjct: 75 ccgtgggga 83
>RF00767;mir-150;AAYZ01332954.1/116-31 9978:Ochotona princeps
(American pika)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 ggccctgtctcccaacccttgtaccagtg 37
||||||||||||||||||| |||||||||
Sbjct: 9 ggccctgtctcccaaccctcgtaccagtg 37
>RF00767;mir-150;AAWZ01021503.1/15832-15746 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 ccctgtctcccaacccttgtaccagtgc 38
|||| |||||||||||||||||||||||
Sbjct: 9 ccctctctcccaacccttgtaccagtgc 36
>RF00767;mir-150;AAVX01101656.1/398-309 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 ccctgtctcccaacccttgtaccagtg 37
|||| ||||||||||||||||||||||
Sbjct: 13 ccctctctcccaacccttgtaccagtg 39
