miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00655;mir-28;AAGW01696220.1/775-851 9986:Oryctolagus cuniculus
(rabbit)
Length = 77
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 2 ttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcc 62
Query: 62 ttgaggacagggat 75
||||||||||||||
Sbjct: 63 ttgaggacagggat 76
>RF00917;mir-708;AAGU02375962.1/1414-1485 9785:Loxodonta africana
(African savanna elephant)
Length = 72
Score = 127 bits (64), Expect = 3e-29
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 2 ttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcc 61
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 72 ttcctgccctcgaggagctcacagtctagtatgtgccatcccctactagactgaagctcc 13
Query: 62 ttgaggacaggg 73
||||||||||||
Sbjct: 12 ttgaggacaggg 1
>RF00917;mir-708;ABRQ01255356.1/770-840 9813:Procavia capensis
(cape rock hyrax)
Length = 71
Score = 87.7 bits (44), Expect = 2e-17
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 2 ttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcc 61
|||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||
Sbjct: 71 ttcctgccctcgaggagctcacagtctagtgtgtgccatcccc-actagactgaggctcc 13
Query: 62 ttgaggacaggg 73
| ||||||||||
Sbjct: 12 tggaggacaggg 1
>RF00655;mir-28;ABRQ01255356.1/842-767 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 87.7 bits (44), Expect = 2e-17
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 ttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcc 61
|||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||
Sbjct: 3 ttcctgccctcgaggagctcacagtctagtgtgtgccatcccc-actagactgaggctcc 61
Query: 62 ttgaggacaggg 73
| ||||||||||
Sbjct: 62 tggaggacaggg 73
>RF00917;mir-708;AAIY01415377.1/489-558 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 70
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 2 ttcctgccctcgaggagctcacagtctagtatgtctcatcccctactagactgaagctcc 61
||||||||||||||||||||||||||||||| || || ||||||||||||| |||||
Sbjct: 70 ttcctgccctcgaggagctcacagtctagtacgtgcca--ccctactagactggcgctcc 13
Query: 62 ttgaggacaggg 73
||||||||||||
Sbjct: 12 ttgaggacaggg 1
>RF00917;mir-708;ABRQ01069155.1/911-831 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 cctgccctcgaggagctcacagtcta 29
||||||||| ||||||||||||||||
Sbjct: 79 cctgccctcaaggagctcacagtcta 54
>RF00655;mir-28;ABRQ01069155.1/829-914 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 cctgccctcgaggagctcacagtcta 29
||||||||| ||||||||||||||||
Sbjct: 5 cctgccctcaaggagctcacagtcta 30
