miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;ABRQ01001566.1/8621-8537 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 121 bits (61), Expect = 2e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 10 ggcccaagttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaac 69
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggcccaggttctgtgatacactcagactcgggctctggagcagtcagtgcatgacagaac 69
Query: 70 ttgggcccg 78
|||||||||
Sbjct: 70 ttgggcccg 78
>RF00248;mir-148;AAFR03029848.1/1033-1118 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 99.6 bits (50), Expect = 6e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 10 ggcccaagttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaac 69
|||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 10 ggcccaggttctgtgatacactccgacttagactctggagcagtcagtgcatgacagaac 69
Query: 70 ttgggc 75
||||||
Sbjct: 70 ttgggc 75
>RF00248;mir-148;CR450718.10/98432-98517 7955:Danio rerio
(zebrafish)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 14 caagttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaacttgg 73
||||||||||||||||||| |||| | || | | ||||||||||||||||||||| |
Sbjct: 14 caagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttg 73
Query: 74 gcccggaaggacc 86
||||||| |||||
Sbjct: 74 gcccggacggacc 86
>RF00248;mir-148;CU104777.4/16075-15990 7955:Danio rerio
(zebrafish)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagttctgtgatacactccgactc 38
||||||||||||||||||||||||
Sbjct: 16 aagttctgtgatacactccgactc 39
